miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 22992 0.68 0.766199
Target:  5'- cGGCGgaGGAAgaggggGGcCCGGAGGCGg -3'
miRNA:   3'- aCUGCgaCCUUagag--CC-GGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 34908 0.68 0.766199
Target:  5'- gGACGC-GGAgGUCggggcgCGGCCacgcgGggGGCGg -3'
miRNA:   3'- aCUGCGaCCU-UAGa-----GCCGG-----CuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 22786 0.68 0.766199
Target:  5'- --cCGCgagaagGGggUUgucgCGGCCGgcGGCGg -3'
miRNA:   3'- acuGCGa-----CCuuAGa---GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 74475 0.68 0.762403
Target:  5'- cGGCGCggcgugccugggcGGGAUCUCGGCgCucuucGGGGCGg -3'
miRNA:   3'- aCUGCGa------------CCUUAGAGCCG-Gc----UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 57867 0.68 0.756674
Target:  5'- cGGCGCUcgggucGGGAagUCGGCCGGcacgGGGaCGg -3'
miRNA:   3'- aCUGCGA------CCUUagAGCCGGCU----UCC-GC- -5'
23847 3' -56.4 NC_005261.1 + 40289 0.68 0.756674
Target:  5'- aGACGaugUGGAcguUCUCGucGCgGAGGGCGg -3'
miRNA:   3'- aCUGCg--ACCUu--AGAGC--CGgCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 91245 0.69 0.747038
Target:  5'- cGGCGCUGGAca-UCGGCgacuuuguuaUGAcGGCGg -3'
miRNA:   3'- aCUGCGACCUuagAGCCG----------GCUuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 23628 0.69 0.737301
Target:  5'- gGGCGCggcgGGggUCgggCGGCUgGAAGGg- -3'
miRNA:   3'- aCUGCGa---CCuuAGa--GCCGG-CUUCCgc -5'
23847 3' -56.4 NC_005261.1 + 64497 0.69 0.71756
Target:  5'- gUGGCGCgGGug-CUCGGggcCCGcGGGCGg -3'
miRNA:   3'- -ACUGCGaCCuuaGAGCC---GGCuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 98711 0.69 0.71756
Target:  5'- cUGGgGCcGGggUC-CGGCCuuGggGGCa -3'
miRNA:   3'- -ACUgCGaCCuuAGaGCCGG--CuuCCGc -5'
23847 3' -56.4 NC_005261.1 + 43818 0.69 0.707576
Target:  5'- gGGCGCgcccuccgUGGAGaagcugCUCGG-CGAGGGCGa -3'
miRNA:   3'- aCUGCG--------ACCUUa-----GAGCCgGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 105140 0.69 0.707576
Target:  5'- cGGCGCgcgcaGGuccUCgCGGCuCGAGGGCGg -3'
miRNA:   3'- aCUGCGa----CCuu-AGaGCCG-GCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 70648 0.69 0.707576
Target:  5'- cGGCGCUGaGGuUCggcgccgCGGCCGcGGGCc -3'
miRNA:   3'- aCUGCGAC-CUuAGa------GCCGGCuUCCGc -5'
23847 3' -56.4 NC_005261.1 + 98118 0.69 0.703564
Target:  5'- cGAgGCUGGGGaCgccgcggcaccggCGGCCGucGGCGg -3'
miRNA:   3'- aCUgCGACCUUaGa------------GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 121814 0.7 0.697527
Target:  5'- cGugGCUGGGcUCUgCgGGCCGccgcGGCGg -3'
miRNA:   3'- aCugCGACCUuAGA-G-CCGGCuu--CCGC- -5'
23847 3' -56.4 NC_005261.1 + 80897 0.7 0.687424
Target:  5'- cGGCGCcucccaGGggUCcucgucgCGGUCGAAGGCc -3'
miRNA:   3'- aCUGCGa-----CCuuAGa------GCCGGCUUCCGc -5'
23847 3' -56.4 NC_005261.1 + 21207 0.7 0.687424
Target:  5'- gGACGCUGGcc-C-CGGCCGcgacGGCGg -3'
miRNA:   3'- aCUGCGACCuuaGaGCCGGCuu--CCGC- -5'
23847 3' -56.4 NC_005261.1 + 97150 0.7 0.677274
Target:  5'- aGGCGCUGGcgccggCcCGGCCGGcugggucgcGGGCGc -3'
miRNA:   3'- aCUGCGACCuua---GaGCCGGCU---------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 2425 0.7 0.664026
Target:  5'- cGGCgGCgGGccgcGAUCUCGGCCagcgccucggggucGAAGGCGa -3'
miRNA:   3'- aCUG-CGaCC----UUAGAGCCGG--------------CUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 28744 0.7 0.656872
Target:  5'- cGAgGCcccagaGGAcgCcgCGGCCGggGGCGc -3'
miRNA:   3'- aCUgCGa-----CCUuaGa-GCCGGCuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.