miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 113898 0.67 0.845489
Target:  5'- cGACGCggcGGGcgCgauGGCCGAggcagcGGGCGc -3'
miRNA:   3'- aCUGCGa--CCUuaGag-CCGGCU------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 61574 0.67 0.845489
Target:  5'- gUGGCGCUGGuga--UGGCCGuguucguGGGCa -3'
miRNA:   3'- -ACUGCGACCuuagaGCCGGCu------UCCGc -5'
23847 3' -56.4 NC_005261.1 + 130513 0.67 0.845489
Target:  5'- gUGGCGCaGGcg-CU-GGCCGAAGcGCGc -3'
miRNA:   3'- -ACUGCGaCCuuaGAgCCGGCUUC-CGC- -5'
23847 3' -56.4 NC_005261.1 + 19096 0.67 0.844683
Target:  5'- gUGGCGUUGGAaguugcggGUCagcCGGUCGGuggggcuAGGCGg -3'
miRNA:   3'- -ACUGCGACCU--------UAGa--GCCGGCU-------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 125882 0.67 0.837353
Target:  5'- cGGCGCc-----CUUGGCUGAAGGCGc -3'
miRNA:   3'- aCUGCGaccuuaGAGCCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 13096 0.67 0.82903
Target:  5'- gGGCgGC-GGg--CUCGGCuCGggGGCGu -3'
miRNA:   3'- aCUG-CGaCCuuaGAGCCG-GCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 38246 0.67 0.82903
Target:  5'- gGGCGCcGGGcucgcacgccaGcCUgGGCUGggGGCGg -3'
miRNA:   3'- aCUGCGaCCU-----------UaGAgCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 113556 0.67 0.82903
Target:  5'- -cGCGCUGGAccgcgagcagugGUCggUGGCCGccgcgcuGGGCGa -3'
miRNA:   3'- acUGCGACCU------------UAGa-GCCGGCu------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 97355 0.67 0.820527
Target:  5'- aUGACcgUGGggUCUaCGGCCc-GGGCGu -3'
miRNA:   3'- -ACUGcgACCuuAGA-GCCGGcuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 30790 0.67 0.820527
Target:  5'- cGGCGgUGGAGgugCUgGgGCCGGAGGa- -3'
miRNA:   3'- aCUGCgACCUUa--GAgC-CGGCUUCCgc -5'
23847 3' -56.4 NC_005261.1 + 28785 0.68 0.803015
Target:  5'- cGGCGC-GGGcgCUcgCGGCCGc-GGCGg -3'
miRNA:   3'- aCUGCGaCCUuaGA--GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 97228 0.68 0.803015
Target:  5'- aGGCGCUGGcgccggCcCGGCCGGcuGGGUc -3'
miRNA:   3'- aCUGCGACCuua---GaGCCGGCU--UCCGc -5'
23847 3' -56.4 NC_005261.1 + 98526 0.68 0.803015
Target:  5'- aGGCGCga-GAUC-CGGCCGGuAGGCu -3'
miRNA:   3'- aCUGCGaccUUAGaGCCGGCU-UCCGc -5'
23847 3' -56.4 NC_005261.1 + 34221 0.68 0.803015
Target:  5'- gGACGC-GGAcgCagacgCGGCCGucaucuGGGGCGa -3'
miRNA:   3'- aCUGCGaCCUuaGa----GCCGGC------UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 131698 0.68 0.794022
Target:  5'- cGGCGCUGGAccgcCUCGagaGCC--AGGCGg -3'
miRNA:   3'- aCUGCGACCUua--GAGC---CGGcuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 83391 0.68 0.794022
Target:  5'- -aGCGC-GGc--CUCGGCCGA-GGCGa -3'
miRNA:   3'- acUGCGaCCuuaGAGCCGGCUuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 5890 0.68 0.794022
Target:  5'- cUGGCucgGCUGGcuagCUCGGCCGGccGGCu -3'
miRNA:   3'- -ACUG---CGACCuua-GAGCCGGCUu-CCGc -5'
23847 3' -56.4 NC_005261.1 + 33847 0.68 0.794022
Target:  5'- cUGGCGCUGGg--Cg-GGCCGGgaGGGCc -3'
miRNA:   3'- -ACUGCGACCuuaGagCCGGCU--UCCGc -5'
23847 3' -56.4 NC_005261.1 + 118156 0.68 0.782113
Target:  5'- aGACGCUGGccgucGcggcggggcuugccGUCUgGGCCGcGGGCc -3'
miRNA:   3'- aCUGCGACC-----U--------------UAGAgCCGGCuUCCGc -5'
23847 3' -56.4 NC_005261.1 + 98285 0.68 0.775605
Target:  5'- cGACGCccGGcgcGUCcgCGGCCucGggGGCGg -3'
miRNA:   3'- aCUGCGa-CCu--UAGa-GCCGG--CuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.