miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 101790 0.66 0.999444
Target:  5'- uGCCGCC--CGGCGggGcu---GCGCa -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 117520 0.66 0.999702
Target:  5'- cGCCACgAUgAGCGuguccaccgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuucuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19938 0.66 0.999556
Target:  5'- cGCUAgCGUCcugGGCGggGGugGGGCgGCCu -3'
miRNA:   3'- -CGGUgGUAG---UCGCuuCUuaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 50808 0.66 0.999648
Target:  5'- cGCCGCCAugacgggcUCcGCGcGGcuu-GGCGCCg -3'
miRNA:   3'- -CGGUGGU--------AGuCGCuUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 91944 0.66 0.999556
Target:  5'- uGCCACaCGUgGGCGAcGAucuuGUAcccGGCGCa -3'
miRNA:   3'- -CGGUG-GUAgUCGCUuCU----UAU---UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 16720 0.66 0.999639
Target:  5'- cGCCgguacugGCCcUCGGCGAGccgcgcGGGCGCCg -3'
miRNA:   3'- -CGG-------UGGuAGUCGCUUcuua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31117 0.66 0.999723
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 113190 0.66 0.999444
Target:  5'- gGCCACCAgcgccacgcUguGCGAGuacGGcUGcGCGCCg -3'
miRNA:   3'- -CGGUGGU---------AguCGCUU---CUuAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35097 0.66 0.999419
Target:  5'- aGCCGCgGUgAGCGgcGAGccccccagcCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuuCUUauuu-----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 70079 0.66 0.99968
Target:  5'- gGCCACCgaagcccagacguacGcCGGCGA-GAAgcucGGCGCCu -3'
miRNA:   3'- -CGGUGG---------------UaGUCGCUuCUUau--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 78017 0.66 0.999648
Target:  5'- aGCCGCCG-CAGC--AGu----ACGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGcuUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38638 0.66 0.999556
Target:  5'- cGCCGCCGaCGGUGAcGGugaAAGCGgCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUuCUua-UUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 49051 0.66 0.999431
Target:  5'- aGCCGCCGagcacggccagguUC-GCGAAGcgggcacGCGCCg -3'
miRNA:   3'- -CGGUGGU-------------AGuCGCUUCuuauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 17189 0.66 0.999556
Target:  5'- nCCugCcgCGGCGgcGAGcagcGCGCCc -3'
miRNA:   3'- cGGugGuaGUCGCuuCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1834 0.66 0.999648
Target:  5'- aGCgGCC-UCGGCGcgcgcGAA--GGCGCCg -3'
miRNA:   3'- -CGgUGGuAGUCGCuu---CUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 67530 0.66 0.999556
Target:  5'- cGgCGCCcgCGGCGgcGAAcgucgcguCGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCuuCUUauuu----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 98570 0.66 0.999546
Target:  5'- gGCgGCCGUCcuccgcgggcucgGGCGAGuAGgcGGCGCCc -3'
miRNA:   3'- -CGgUGGUAG-------------UCGCUUcUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34873 0.67 0.999214
Target:  5'- aCCGCCAUCGaCGAcacggagucggagucGGAGUcGGACGCg -3'
miRNA:   3'- cGGUGGUAGUcGCU---------------UCUUA-UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 40267 0.67 0.999145
Target:  5'- gGCgGCCG-CGGCGggGcucAGUAGACGa- -3'
miRNA:   3'- -CGgUGGUaGUCGCuuC---UUAUUUGCgg -5'
23847 5' -47.6 NC_005261.1 + 118592 0.67 0.999145
Target:  5'- cGCCGCCG-CcGCGGAGcuc--GCGCUg -3'
miRNA:   3'- -CGGUGGUaGuCGCUUCuuauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.