Results 21 - 40 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 5' | -47.6 | NC_005261.1 | + | 16720 | 0.66 | 0.999639 |
Target: 5'- cGCCgguacugGCCcUCGGCGAGccgcgcGGGCGCCg -3' miRNA: 3'- -CGG-------UGGuAGUCGCUUcuua--UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 92234 | 0.66 | 0.999556 |
Target: 5'- cCCGCCG--AGCGcgcGGAUGGAgGCCa -3' miRNA: 3'- cGGUGGUagUCGCuu-CUUAUUUgCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 121023 | 0.66 | 0.999648 |
Target: 5'- cCCGCU---GGCGcGGGAgAAGCGCCg -3' miRNA: 3'- cGGUGGuagUCGCuUCUUaUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 38638 | 0.66 | 0.999556 |
Target: 5'- cGCCGCCGaCGGUGAcGGugaAAGCGgCg -3' miRNA: 3'- -CGGUGGUaGUCGCUuCUua-UUUGCgG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 12623 | 0.66 | 0.999648 |
Target: 5'- cGCCACCA-CGGUGuAGucc-GGCGCg -3' miRNA: 3'- -CGGUGGUaGUCGCuUCuuauUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 25769 | 0.66 | 0.999514 |
Target: 5'- cCCACCcuggggaggacaaggCGGCGAgcAGGAUGgagcucaGGCGCCa -3' miRNA: 3'- cGGUGGua-------------GUCGCU--UCUUAU-------UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 121424 | 0.66 | 0.999556 |
Target: 5'- cGCCGCCGcuacggggCGGCGggGcgggcauGGgGCCg -3' miRNA: 3'- -CGGUGGUa-------GUCGCuuCuuau---UUgCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 49550 | 0.66 | 0.999444 |
Target: 5'- gGCCACCAcgugguUCAGC--AGcAUGGGCGUg -3' miRNA: 3'- -CGGUGGU------AGUCGcuUCuUAUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 50808 | 0.66 | 0.999648 |
Target: 5'- cGCCGCCAugacgggcUCcGCGcGGcuu-GGCGCCg -3' miRNA: 3'- -CGGUGGU--------AGuCGCuUCuuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 132463 | 0.66 | 0.999556 |
Target: 5'- gGCCGCCcUCcGCGccGGc--AGCGCCu -3' miRNA: 3'- -CGGUGGuAGuCGCuuCUuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 19938 | 0.66 | 0.999556 |
Target: 5'- cGCUAgCGUCcugGGCGggGGugGGGCgGCCu -3' miRNA: 3'- -CGGUgGUAG---UCGCuuCUuaUUUG-CGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 35907 | 0.66 | 0.999648 |
Target: 5'- cCCGCCGcggCAGCGcGGcccc-GCGCCg -3' miRNA: 3'- cGGUGGUa--GUCGCuUCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 59950 | 0.66 | 0.999491 |
Target: 5'- aGCCGCagcgCGGCGcgcgugaacgggucgAAGAA--GGCGCCg -3' miRNA: 3'- -CGGUGgua-GUCGC---------------UUCUUauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 11187 | 0.66 | 0.999556 |
Target: 5'- gGCCcuCCGUC-GCGuuGuuguuuuuaAAUAAACGCCg -3' miRNA: 3'- -CGGu-GGUAGuCGCuuC---------UUAUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 49051 | 0.66 | 0.999431 |
Target: 5'- aGCCGCCGagcacggccagguUC-GCGAAGcgggcacGCGCCg -3' miRNA: 3'- -CGGUGGU-------------AGuCGCUUCuuauu--UGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 98570 | 0.66 | 0.999546 |
Target: 5'- gGCgGCCGUCcuccgcgggcucgGGCGAGuAGgcGGCGCCc -3' miRNA: 3'- -CGgUGGUAG-------------UCGCUUcUUauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 100502 | 0.66 | 0.999546 |
Target: 5'- gGCgUGCCGUCGGCGuccaGGUAGccgcgcgGCGCCa -3' miRNA: 3'- -CG-GUGGUAGUCGCuuc-UUAUU-------UGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 132615 | 0.66 | 0.999648 |
Target: 5'- aGCCGCCAgggGGCGcu-----GGCGCCg -3' miRNA: 3'- -CGGUGGUag-UCGCuucuuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 78017 | 0.66 | 0.999648 |
Target: 5'- aGCCGCCG-CAGC--AGu----ACGCCg -3' miRNA: 3'- -CGGUGGUaGUCGcuUCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 81517 | 0.66 | 0.999444 |
Target: 5'- cGCCGCCGcCGGCGcc----AGGCGCUg -3' miRNA: 3'- -CGGUGGUaGUCGCuucuuaUUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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