miRNA display CGI


Results 21 - 40 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 130165 0.77 0.818812
Target:  5'- uCCACCGUCAGCGGcgccggcagcaGGGAgcuGACgGCCa -3'
miRNA:   3'- cGGUGGUAGUCGCU-----------UCUUau-UUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 95405 0.77 0.818812
Target:  5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 67324 0.77 0.827868
Target:  5'- cGCCGCCGcgcUCAGcCGcAGGAacAGCGCCg -3'
miRNA:   3'- -CGGUGGU---AGUC-GCuUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 60035 0.77 0.831435
Target:  5'- cGCCGCCGUCggcgccgacggcggcGGCGAAGAGc-GGCgGCCg -3'
miRNA:   3'- -CGGUGGUAG---------------UCGCUUCUUauUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 5560 0.76 0.836723
Target:  5'- gGgCGCCcgagCGGCGGAGAuggGGGCGCCg -3'
miRNA:   3'- -CgGUGGua--GUCGCUUCUua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 44853 0.76 0.836723
Target:  5'- aGCCGCag-CcGCGAGGAA-GAGCGCCg -3'
miRNA:   3'- -CGGUGguaGuCGCUUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 15149 0.76 0.845368
Target:  5'- cCCGCCGUCcGCGGugGGggUGGGCGUa -3'
miRNA:   3'- cGGUGGUAGuCGCU--UCuuAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 133158 0.76 0.845368
Target:  5'- cGCCGCCGUCGGCGucGc-----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43426 0.76 0.853794
Target:  5'- uCCGCCGcCGGCGggGAGcUGgcucGGCGCCu -3'
miRNA:   3'- cGGUGGUaGUCGCuuCUU-AU----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 53160 0.76 0.853794
Target:  5'- cGCCGCCGUCGuCGggGuc-GAACGCg -3'
miRNA:   3'- -CGGUGGUAGUcGCuuCuuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 102943 0.76 0.861993
Target:  5'- cGCCGCCGcugCGGCGgcGGccgcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa--GUCGCuuCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101218 0.76 0.861993
Target:  5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3'
miRNA:   3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 13346 0.76 0.861993
Target:  5'- gGCCAgCgGUCGGCGGAGGcUGGGCGgCa -3'
miRNA:   3'- -CGGU-GgUAGUCGCUUCUuAUUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 64004 0.76 0.869958
Target:  5'- aGCCGcCCAUCAGCGcguAG-GUGAGCGUg -3'
miRNA:   3'- -CGGU-GGUAGUCGCu--UCuUAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 98187 0.75 0.877682
Target:  5'- aGCCGCCGggggcgCGGCGGGcAGcGGGCGCCg -3'
miRNA:   3'- -CGGUGGUa-----GUCGCUUcUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19543 0.75 0.885158
Target:  5'- cGUCACCGcCAGCGccGugggGAGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112072 0.75 0.885158
Target:  5'- uGCCcUCGUCGGCGAGG-----GCGCCa -3'
miRNA:   3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47265 0.75 0.885158
Target:  5'- cGCCGgcCCGcCGGCGAAGA----GCGCCg -3'
miRNA:   3'- -CGGU--GGUaGUCGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 103861 0.75 0.892381
Target:  5'- aGCCGCgG-CGGCGgcGGGgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135130 0.75 0.892381
Target:  5'- uCCGCagcgCGGCGggGGAgacGACGCCg -3'
miRNA:   3'- cGGUGgua-GUCGCuuCUUau-UUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.