miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 10893 0.71 0.984208
Target:  5'- cGgCGCCAaCGGCGgcGGcgGcAGCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCuuCUuaU-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 11187 0.66 0.999556
Target:  5'- gGCCcuCCGUC-GCGuuGuuguuuuuaAAUAAACGCCg -3'
miRNA:   3'- -CGGu-GGUAGuCGCuuC---------UUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12190 0.7 0.989253
Target:  5'- cGCCACCAUgCAGCGccGc-----CGCCg -3'
miRNA:   3'- -CGGUGGUA-GUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12417 0.67 0.998717
Target:  5'- aGCCcuCCAggggCGGCGGAGGGcuugcGGCGUCg -3'
miRNA:   3'- -CGGu-GGUa---GUCGCUUCUUau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12537 0.69 0.995543
Target:  5'- cGCCGCCGaauUUAuacGCGggGGccccGCGCCg -3'
miRNA:   3'- -CGGUGGU---AGU---CGCuuCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12590 0.71 0.984208
Target:  5'- gGgCGCC--UAGCGGAGGAUGGacuucagccGCGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCUUCUUAUU---------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12623 0.66 0.999648
Target:  5'- cGCCACCA-CGGUGuAGucc-GGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuUCuuauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 12814 0.68 0.997742
Target:  5'- cGCUGCCGUCcuccGCGAAGGAaGAGuccuCGUCg -3'
miRNA:   3'- -CGGUGGUAGu---CGCUUCUUaUUU----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 12968 0.72 0.958366
Target:  5'- cGCgCACCccagaCAGCGAGGGccgcGACGCCg -3'
miRNA:   3'- -CG-GUGGua---GUCGCUUCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 13346 0.76 0.861993
Target:  5'- gGCCAgCgGUCGGCGGAGGcUGGGCGgCa -3'
miRNA:   3'- -CGGU-GgUAGUCGCUUCUuAUUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 13664 0.71 0.97996
Target:  5'- cGCCGCCG-CGGgGggGGcgcgGGGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCgCuuCUua--UUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 14079 0.67 0.998717
Target:  5'- gGCCA-CGUCGGCGAAGcacu--CGCg -3'
miRNA:   3'- -CGGUgGUAGUCGCUUCuuauuuGCGg -5'
23847 5' -47.6 NC_005261.1 + 14215 0.7 0.99062
Target:  5'- gGCgCACCAacgcgcgCGGUGAAGAcc--GCGCCg -3'
miRNA:   3'- -CG-GUGGUa------GUCGCUUCUuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 15149 0.76 0.845368
Target:  5'- cCCGCCGUCcGCGGugGGggUGGGCGUa -3'
miRNA:   3'- cGGUGGUAGuCGCU--UCuuAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 15200 0.79 0.729917
Target:  5'- cGCCGCCAUCGcGCGGucguAGAGgcu-CGCCg -3'
miRNA:   3'- -CGGUGGUAGU-CGCU----UCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 15391 0.69 0.995543
Target:  5'- cGCCGCCGUCGaugccgacGCGcAGAaaGUAGA-GCCc -3'
miRNA:   3'- -CGGUGGUAGU--------CGCuUCU--UAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 15601 0.69 0.994781
Target:  5'- aGUCGCCGUCGaCGAGGu---AGCGCa -3'
miRNA:   3'- -CGGUGGUAGUcGCUUCuuauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 16262 0.67 0.999308
Target:  5'- gGCCGCCGgggccgggcuUCGGCucgcccGggGG---GGCGCCg -3'
miRNA:   3'- -CGGUGGU----------AGUCG------CuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 16720 0.66 0.999639
Target:  5'- cGCCgguacugGCCcUCGGCGAGccgcgcGGGCGCCg -3'
miRNA:   3'- -CGG-------UGGuAGUCGCUUcuua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 17062 0.69 0.992839
Target:  5'- cGCgGCCGUCcuggaagGGCGAcGGGAUGGGC-CCg -3'
miRNA:   3'- -CGgUGGUAG-------UCGCU-UCUUAUUUGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.