miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 1306 0.68 0.99735
Target:  5'- cGUCGCCggCGGCGGcacgcgcuccgGGACGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUucuua------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1408 0.71 0.974914
Target:  5'- gGCCGCgGcggCGGCGggGGc--GGCGCCc -3'
miRNA:   3'- -CGGUGgUa--GUCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1762 0.71 0.974363
Target:  5'- gGCCACCGUgUAGCGcacguu-GGCGCCg -3'
miRNA:   3'- -CGGUGGUA-GUCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1796 0.68 0.996211
Target:  5'- aGCCGCag-CGGCGGcgccccGGggUAGA-GCCg -3'
miRNA:   3'- -CGGUGguaGUCGCU------UCuuAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 1834 0.66 0.999648
Target:  5'- aGCgGCC-UCGGCGcgcgcGAA--GGCGCCg -3'
miRNA:   3'- -CGgUGGuAGUCGCuu---CUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 1984 0.71 0.982179
Target:  5'- gGCCggGCCAUCGGCGGccaguucgcGGggUccacGGCGUCg -3'
miRNA:   3'- -CGG--UGGUAGUCGCU---------UCuuAu---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 2377 0.67 0.998442
Target:  5'- cGCCGCCG-CAGCGgcGcgcuGGCGgCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 2445 0.69 0.994781
Target:  5'- gGCCAgCGccUCGGgGucGAAggcGAGCGCCg -3'
miRNA:   3'- -CGGUgGU--AGUCgCuuCUUa--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 2603 0.85 0.416696
Target:  5'- aGCCGCCGUCGGCGgcGGGgc--CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 2795 0.68 0.997742
Target:  5'- uGCCGCCggCGGCcgGGAGGGgccGGGCgGCCc -3'
miRNA:   3'- -CGGUGGuaGUCG--CUUCUUa--UUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 3458 0.71 0.984208
Target:  5'- gGCCGCCGcgcCGcGCGucGAGUAccGCGCCa -3'
miRNA:   3'- -CGGUGGUa--GU-CGCuuCUUAUu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 3536 0.67 0.998949
Target:  5'- gGCCGCC-UCGGCGcgcagcgcggcGGGcgc-GGCGCCg -3'
miRNA:   3'- -CGGUGGuAGUCGC-----------UUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 4529 0.68 0.996795
Target:  5'- gGgCGCCG-CGGCGAGG-----GCGCCg -3'
miRNA:   3'- -CgGUGGUaGUCGCUUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 4897 0.68 0.998119
Target:  5'- gGCCGCCucggcuUCGGCGgcGGcugccucCGCCg -3'
miRNA:   3'- -CGGUGGu-----AGUCGCuuCUuauuu--GCGG- -5'
23847 5' -47.6 NC_005261.1 + 5113 0.7 0.99062
Target:  5'- uCCGCCAgcUCGGCGcGGGcgGccCGCCg -3'
miRNA:   3'- cGGUGGU--AGUCGCuUCUuaUuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 5438 0.67 0.999145
Target:  5'- cGCgGCCG-CGGCGgcGGcaacAGCGCCc -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUuau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 5509 0.71 0.984208
Target:  5'- gGCCGCgG-CAGCGgcGGcgAGGcCGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCuuCUuaUUU-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 5560 0.76 0.836723
Target:  5'- gGgCGCCcgagCGGCGGAGAuggGGGCGCCg -3'
miRNA:   3'- -CgGUGGua--GUCGCUUCUua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 8562 0.67 0.998717
Target:  5'- gGCCGCCccgggaAGUGAGGAcgcuggcaGAAUGCCa -3'
miRNA:   3'- -CGGUGGuag---UCGCUUCUua------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 8805 0.72 0.965698
Target:  5'- aGCCGCCGagGGCuuGAAGG---GGCGCCc -3'
miRNA:   3'- -CGGUGGUagUCG--CUUCUuauUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.