miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 109072 0.65 0.999766
Target:  5'- cGgCGCC-UCGGCGAucaugccguuggccAGGucccGGACGCCg -3'
miRNA:   3'- -CgGUGGuAGUCGCU--------------UCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 36594 0.65 0.999772
Target:  5'- gGCCACCGggggggggCAGCGcuccu---GCGCCc -3'
miRNA:   3'- -CGGUGGUa-------GUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35097 0.66 0.999419
Target:  5'- aGCCGCgGUgAGCGgcGAGccccccagcCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuuCUUauuu-----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 17189 0.66 0.999556
Target:  5'- nCCugCcgCGGCGgcGAGcagcGCGCCc -3'
miRNA:   3'- cGGugGuaGUCGCuuCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59542 0.66 0.999535
Target:  5'- cGCCACCGcgcgcgggcuucuaaUCGGCGcgcgcgc-GCGCCg -3'
miRNA:   3'- -CGGUGGU---------------AGUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 122586 0.66 0.999419
Target:  5'- uCCGCCG-CAGCGGccuugu-ACGCCg -3'
miRNA:   3'- cGGUGGUaGUCGCUucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 25769 0.66 0.999514
Target:  5'- cCCACCcuggggaggacaaggCGGCGAgcAGGAUGgagcucaGGCGCCa -3'
miRNA:   3'- cGGUGGua-------------GUCGCU--UCUUAU-------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59950 0.66 0.999491
Target:  5'- aGCCGCagcgCGGCGcgcgugaacgggucgAAGAA--GGCGCCg -3'
miRNA:   3'- -CGGUGgua-GUCGC---------------UUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59042 0.66 0.999503
Target:  5'- uGCCGCCGcgcgagcUCAGCGcgcgcggccgcgGAGAGcgcgcgcggguGCGCCg -3'
miRNA:   3'- -CGGUGGU-------AGUCGC------------UUCUUauu--------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 38638 0.66 0.999556
Target:  5'- cGCCGCCGaCGGUGAcGGugaAAGCGgCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUuCUua-UUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 49051 0.66 0.999431
Target:  5'- aGCCGCCGagcacggccagguUC-GCGAAGcgggcacGCGCCg -3'
miRNA:   3'- -CGGUGGU-------------AGuCGCUUCuuauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 49550 0.66 0.999444
Target:  5'- gGCCACCAcgugguUCAGC--AGcAUGGGCGUg -3'
miRNA:   3'- -CGGUGGU------AGUCGcuUCuUAUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 67530 0.66 0.999556
Target:  5'- cGgCGCCcgCGGCGgcGAAcgucgcguCGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCuuCUUauuu----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 73153 0.66 0.999525
Target:  5'- cGCCGCCAggcggcguuguugcUCGGCcGggGGGaGggUGCa -3'
miRNA:   3'- -CGGUGGU--------------AGUCG-CuuCUUaUuuGCGg -5'
23847 5' -47.6 NC_005261.1 + 47101 0.66 0.999444
Target:  5'- gGCCAgagcCCGUCcGUGAGGAcGUGcGCGUCc -3'
miRNA:   3'- -CGGU----GGUAGuCGCUUCU-UAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 100502 0.66 0.999546
Target:  5'- gGCgUGCCGUCGGCGuccaGGUAGccgcgcgGCGCCa -3'
miRNA:   3'- -CG-GUGGUAGUCGCuuc-UUAUU-------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 98570 0.66 0.999546
Target:  5'- gGCgGCCGUCcuccgcgggcucgGGCGAGuAGgcGGCGCCc -3'
miRNA:   3'- -CGgUGGUAG-------------UCGCUUcUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 81517 0.66 0.999444
Target:  5'- cGCCGCCGcCGGCGcc----AGGCGCUg -3'
miRNA:   3'- -CGGUGGUaGUCGCuucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 101790 0.66 0.999444
Target:  5'- uGCCGCC--CGGCGggGcu---GCGCa -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 41629 0.66 0.999444
Target:  5'- uGCgGCCcUCGGCGAccuuGAGgu-GCGCg -3'
miRNA:   3'- -CGgUGGuAGUCGCUu---CUUauuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.