miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 36594 0.65 0.999772
Target:  5'- gGCCACCGggggggggCAGCGcuccu---GCGCCc -3'
miRNA:   3'- -CGGUGGUa-------GUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 34236 0.79 0.729917
Target:  5'- cGCgGCCGUCaucuggGGCGAAGAcUAcGACGCCg -3'
miRNA:   3'- -CGgUGGUAG------UCGCUUCUuAU-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 121553 0.78 0.750622
Target:  5'- aGCCGCCGuccUCGGCGAAGGGcggGGACgagGCCu -3'
miRNA:   3'- -CGGUGGU---AGUCGCUUCUUa--UUUG---CGG- -5'
23847 5' -47.6 NC_005261.1 + 107688 0.77 0.790533
Target:  5'- uGCCGCCG-CGGCGggG-----GCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 54764 0.77 0.800135
Target:  5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3'
miRNA:   3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 70966 0.77 0.800135
Target:  5'- cGCCGCgA-CGGCGAAGAA-GAGCGCg -3'
miRNA:   3'- -CGGUGgUaGUCGCUUCUUaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 49195 0.77 0.809565
Target:  5'- gGCCcucgGCCGaCAGCGAGGGcgGGAgGCCg -3'
miRNA:   3'- -CGG----UGGUaGUCGCUUCUuaUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 75313 0.77 0.809565
Target:  5'- cGCCACCGUCGGCGgcGcgcgGAGC-CCu -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuua-UUUGcGG- -5'
23847 5' -47.6 NC_005261.1 + 95405 0.77 0.818812
Target:  5'- gGCCAUCA-CGGCGGAGcaGAacAACGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCUUC--UUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 15200 0.79 0.729917
Target:  5'- cGCCGCCAUCGcGCGGucguAGAGgcu-CGCCg -3'
miRNA:   3'- -CGGUGGUAGU-CGCU----UCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 76043 0.79 0.729917
Target:  5'- cGCgCGCCAUCAGCGuGGccggcGGGCGCCa -3'
miRNA:   3'- -CG-GUGGUAGUCGCuUCuua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 74442 0.79 0.708828
Target:  5'- cGCC-CCccCGGCGggGggUGggGGCGCCg -3'
miRNA:   3'- -CGGuGGuaGUCGCuuCuuAU--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 69690 0.85 0.426058
Target:  5'- cGCCGCCGUCAGaCGAcGAGUAugcgGACGUCg -3'
miRNA:   3'- -CGGUGGUAGUC-GCUuCUUAU----UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 59599 0.84 0.464713
Target:  5'- cGCCACCAccuccgCGGCGcggcGGAUGAGCGCCa -3'
miRNA:   3'- -CGGUGGUa-----GUCGCuu--CUUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31446 0.82 0.546958
Target:  5'- cGCCGCC--CGGCGAGGAc-GAGCGCCg -3'
miRNA:   3'- -CGGUGGuaGUCGCUUCUuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 100398 0.81 0.589837
Target:  5'- cGCCGCCGUugucCAGCGggGGGcgcaucgAGGCGCCc -3'
miRNA:   3'- -CGGUGGUA----GUCGCuuCUUa------UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32414 0.8 0.644143
Target:  5'- uGCCGCCGcCGGCGAcgGGAGccccgccggccUGGGCGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCU--UCUU-----------AUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32501 0.8 0.65501
Target:  5'- cGgCGgCAUCGGCGggGggUccGCGCCg -3'
miRNA:   3'- -CgGUgGUAGUCGCuuCuuAuuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 82621 0.8 0.676672
Target:  5'- aGCCGCCGgaUCAGCGAGGccgacauGUGGugGUCg -3'
miRNA:   3'- -CGGUGGU--AGUCGCUUCu------UAUUugCGG- -5'
23847 5' -47.6 NC_005261.1 + 92504 0.79 0.698169
Target:  5'- gGCCAgcUCGUCAGCGggGGA-GGAgGCCa -3'
miRNA:   3'- -CGGU--GGUAGUCGCuuCUUaUUUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.