miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 136224 0.7 0.989253
Target:  5'- -aCGCCAUCcggggacuagAGCGAGGGcaGAGgGCCg -3'
miRNA:   3'- cgGUGGUAG----------UCGCUUCUuaUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 135788 0.69 0.995543
Target:  5'- uGCCGCUGUCggaGGUGAccguGGGcgAcGCGCCg -3'
miRNA:   3'- -CGGUGGUAG---UCGCU----UCUuaUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135241 0.72 0.969
Target:  5'- cGCCGCCGUCuuuGCGGGcgcgcGGAUGGACaucaugcgGCCu -3'
miRNA:   3'- -CGGUGGUAGu--CGCUU-----CUUAUUUG--------CGG- -5'
23847 5' -47.6 NC_005261.1 + 135130 0.75 0.892381
Target:  5'- uCCGCagcgCGGCGggGGAgacGACGCCg -3'
miRNA:   3'- cGGUGgua-GUCGCuuCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 135027 0.75 0.899346
Target:  5'- cGCgGCCG-CGGCGgcGAGgccGACGCCu -3'
miRNA:   3'- -CGgUGGUaGUCGCuuCUUau-UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 134965 0.69 0.992943
Target:  5'- cGCCGgCGacgcagaCGGCGAGGAcgGGGcCGCCg -3'
miRNA:   3'- -CGGUgGUa------GUCGCUUCUuaUUU-GCGG- -5'
23847 5' -47.6 NC_005261.1 + 134472 0.72 0.97207
Target:  5'- gGCCGCCAUCgugGGCGgcGucgucGCGCUg -3'
miRNA:   3'- -CGGUGGUAG---UCGCuuCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 134359 0.74 0.93019
Target:  5'- cGCCGCCG-C-GCGggGGGc-GGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCGCuuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 133158 0.76 0.845368
Target:  5'- cGCCGCCGUCGGCGucGc-----CGCCg -3'
miRNA:   3'- -CGGUGGUAGUCGCuuCuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 133101 0.66 0.999648
Target:  5'- gGCCGCCGUCAaccgcGCGGccuuccacGGcGUGcGCGUCu -3'
miRNA:   3'- -CGGUGGUAGU-----CGCU--------UCuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 132615 0.66 0.999648
Target:  5'- aGCCGCCAgggGGCGcu-----GGCGCCg -3'
miRNA:   3'- -CGGUGGUag-UCGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 132537 0.69 0.992943
Target:  5'- aGCgCGCCcUCGcgcGCGAGGGcgAGGCGCa -3'
miRNA:   3'- -CG-GUGGuAGU---CGCUUCUuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 132463 0.66 0.999556
Target:  5'- gGCCGCCcUCcGCGccGGc--AGCGCCu -3'
miRNA:   3'- -CGGUGGuAGuCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 132079 0.71 0.974914
Target:  5'- gGCCGCCGUCGccgcugccGCGGAGGGcggccgcGACGCg -3'
miRNA:   3'- -CGGUGGUAGU--------CGCUUCUUau-----UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 132022 0.68 0.996211
Target:  5'- gGCCGCCGUCA-CGGAc-GUGGcCGCCc -3'
miRNA:   3'- -CGGUGGUAGUcGCUUcuUAUUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 131662 0.75 0.906049
Target:  5'- gGCgCACCGUCuGCGAGGGugcGAcCGCCc -3'
miRNA:   3'- -CG-GUGGUAGuCGCUUCUua-UUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 131420 0.69 0.994781
Target:  5'- cGCUGCCggCAGCGgcGcc--GGCGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGCuuCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 130165 0.77 0.818812
Target:  5'- uCCACCGUCAGCGGcgccggcagcaGGGAgcuGACgGCCa -3'
miRNA:   3'- cGGUGGUAGUCGCU-----------UCUUau-UUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 128929 0.67 0.998442
Target:  5'- uGCCACguUCGcccccaaacGCGAcGAG--GACGCCg -3'
miRNA:   3'- -CGGUGguAGU---------CGCUuCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 128799 0.68 0.998119
Target:  5'- cGCCcggGCCcgCGGCGggGcuc--GCGCUg -3'
miRNA:   3'- -CGG---UGGuaGUCGCuuCuuauuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.