miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 35907 0.66 0.999648
Target:  5'- cCCGCCGcggCAGCGcGGcccc-GCGCCg -3'
miRNA:   3'- cGGUGGUa--GUCGCuUCuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31681 0.66 0.999648
Target:  5'- gGCCGCgGcgCGGCGgcGGcugaucGUGaucGACGCCg -3'
miRNA:   3'- -CGGUGgUa-GUCGCuuCU------UAU---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 12623 0.66 0.999648
Target:  5'- cGCCACCA-CGGUGuAGucc-GGCGCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuUCuuauUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 1834 0.66 0.999648
Target:  5'- aGCgGCC-UCGGCGcgcgcGAA--GGCGCCg -3'
miRNA:   3'- -CGgUGGuAGUCGCuu---CUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 133101 0.66 0.999648
Target:  5'- gGCCGCCGUCAaccgcGCGGccuuccacGGcGUGcGCGUCu -3'
miRNA:   3'- -CGGUGGUAGU-----CGCU--------UCuUAUuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 121023 0.66 0.999648
Target:  5'- cCCGCU---GGCGcGGGAgAAGCGCCg -3'
miRNA:   3'- cGGUGGuagUCGCuUCUUaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 51356 0.66 0.999648
Target:  5'- cGCUggGCUGUcCGGCGcGGAGUAcGCGCa -3'
miRNA:   3'- -CGG--UGGUA-GUCGCuUCUUAUuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 16720 0.66 0.999639
Target:  5'- cGCCgguacugGCCcUCGGCGAGccgcgcGGGCGCCg -3'
miRNA:   3'- -CGG-------UGGuAGUCGCUUcuua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 107544 0.66 0.999595
Target:  5'- gGCCACCAgcacgUCcgagagcacggcagcGGCGAAGua-GGGCGCg -3'
miRNA:   3'- -CGGUGGU-----AG---------------UCGCUUCuuaUUUGCGg -5'
23847 5' -47.6 NC_005261.1 + 112986 0.66 0.999556
Target:  5'- cGCCGCCAUCuuCGuc-----AACGCCa -3'
miRNA:   3'- -CGGUGGUAGucGCuucuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 17189 0.66 0.999556
Target:  5'- nCCugCcgCGGCGgcGAGcagcGCGCCc -3'
miRNA:   3'- cGGugGuaGUCGCuuCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 121424 0.66 0.999556
Target:  5'- cGCCGCCGcuacggggCGGCGggGcgggcauGGgGCCg -3'
miRNA:   3'- -CGGUGGUa-------GUCGCuuCuuau---UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 38638 0.66 0.999556
Target:  5'- cGCCGCCGaCGGUGAcGGugaAAGCGgCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUuCUua-UUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 67530 0.66 0.999556
Target:  5'- cGgCGCCcgCGGCGgcGAAcgucgcguCGCCg -3'
miRNA:   3'- -CgGUGGuaGUCGCuuCUUauuu----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 132463 0.66 0.999556
Target:  5'- gGCCGCCcUCcGCGccGGc--AGCGCCu -3'
miRNA:   3'- -CGGUGGuAGuCGCuuCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 91944 0.66 0.999556
Target:  5'- uGCCACaCGUgGGCGAcGAucuuGUAcccGGCGCa -3'
miRNA:   3'- -CGGUG-GUAgUCGCUuCU----UAU---UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 11187 0.66 0.999556
Target:  5'- gGCCcuCCGUC-GCGuuGuuguuuuuaAAUAAACGCCg -3'
miRNA:   3'- -CGGu-GGUAGuCGCuuC---------UUAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19938 0.66 0.999556
Target:  5'- cGCUAgCGUCcugGGCGggGGugGGGCgGCCu -3'
miRNA:   3'- -CGGUgGUAG---UCGCuuCUuaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 92234 0.66 0.999556
Target:  5'- cCCGCCG--AGCGcgcGGAUGGAgGCCa -3'
miRNA:   3'- cGGUGGUagUCGCuu-CUUAUUUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 75993 0.66 0.999556
Target:  5'- gGCCGCCcUC-GCGcuGGAcgcccuGGCGCCg -3'
miRNA:   3'- -CGGUGGuAGuCGCuuCUUau----UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.