Results 41 - 60 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23847 | 5' | -47.6 | NC_005261.1 | + | 62620 | 0.75 | 0.899346 |
Target: 5'- gGCgGCCAUCAGCGccAGcGUGuccggcgcGACGCCg -3' miRNA: 3'- -CGgUGGUAGUCGCu-UCuUAU--------UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 95027 | 0.75 | 0.899346 |
Target: 5'- aGCCGCCGcCGGCGgcGcuc-GGCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 98319 | 0.75 | 0.899346 |
Target: 5'- cGCCGCCGcCAGCGgcGGc---GCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGCuuCUuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 135027 | 0.75 | 0.899346 |
Target: 5'- cGCgGCCG-CGGCGgcGAGgccGACGCCu -3' miRNA: 3'- -CGgUGGUaGUCGCuuCUUau-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 103821 | 0.75 | 0.906049 |
Target: 5'- cGCCGCCAgCAgcucGCGGAGGAgcu-CGCCc -3' miRNA: 3'- -CGGUGGUaGU----CGCUUCUUauuuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 131662 | 0.75 | 0.906049 |
Target: 5'- gGCgCACCGUCuGCGAGGGugcGAcCGCCc -3' miRNA: 3'- -CG-GUGGUAGuCGCUUCUua-UUuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 81331 | 0.74 | 0.910584 |
Target: 5'- cGCCgucgucgggGCCGUCGGCGggGcgggggcuugcgggGGGCGCCg -3' miRNA: 3'- -CGG---------UGGUAGUCGCuuCuua-----------UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 94721 | 0.74 | 0.912488 |
Target: 5'- cGCCGCUAccUCcggGGCGggGAcaccGACGCCg -3' miRNA: 3'- -CGGUGGU--AG---UCGCuuCUuau-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 112393 | 0.74 | 0.912488 |
Target: 5'- gGCCAUCAaCAGCGAcAGc--GAGCGCCc -3' miRNA: 3'- -CGGUGGUaGUCGCU-UCuuaUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 47150 | 0.74 | 0.912488 |
Target: 5'- cGCCGgCGUCGGCGGccgAGAccaccagcgGGACGCCc -3' miRNA: 3'- -CGGUgGUAGUCGCU---UCUua-------UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 97474 | 0.74 | 0.912488 |
Target: 5'- cGCCaaaACCGUCGGgGggGcccuuggGGGCGCCg -3' miRNA: 3'- -CGG---UGGUAGUCgCuuCuua----UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 121831 | 0.74 | 0.912488 |
Target: 5'- gGCCGCCG-CGGCGgcGcaccGGCGCCa -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 114551 | 0.74 | 0.918658 |
Target: 5'- aCUACC-UCGGCGggGAGcGGcCGCCg -3' miRNA: 3'- cGGUGGuAGUCGCuuCUUaUUuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 42923 | 0.74 | 0.918658 |
Target: 5'- gGCCGCCG--GGCGAGuGggUGcggauccacccGACGCCg -3' miRNA: 3'- -CGGUGGUagUCGCUU-CuuAU-----------UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 86835 | 0.74 | 0.922817 |
Target: 5'- gGCCGCCAUCAcCGAGGccagccggcgcucAACGCCg -3' miRNA: 3'- -CGGUGGUAGUcGCUUCuuau---------UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 67378 | 0.74 | 0.923401 |
Target: 5'- cGCCACCG-CcGCGAAGAccgccgcgcGCGCCa -3' miRNA: 3'- -CGGUGGUaGuCGCUUCUuauu-----UGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 37919 | 0.74 | 0.924559 |
Target: 5'- cGCCACCG-CuGCGc-GAGUacGAGCGCCg -3' miRNA: 3'- -CGGUGGUaGuCGCuuCUUA--UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 67964 | 0.74 | 0.924559 |
Target: 5'- gGCCGCCG-CGGCGAuGGAGUu--CGCUu -3' miRNA: 3'- -CGGUGGUaGUCGCU-UCUUAuuuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 93487 | 0.74 | 0.925134 |
Target: 5'- cGUCGCCcgCGGCGAAGcgcgcgaaccgcGGCGCCg -3' miRNA: 3'- -CGGUGGuaGUCGCUUCuuau--------UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 59231 | 0.74 | 0.93019 |
Target: 5'- uGCCGCCGggccacgAGCG-AGAGcGGGCGCCg -3' miRNA: 3'- -CGGUGGUag-----UCGCuUCUUaUUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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