miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 17162 0.71 0.982179
Target:  5'- cGUCACCcgCGGCGcGGGcGUGGGCaGCCc -3'
miRNA:   3'- -CGGUGGuaGUCGCuUCU-UAUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 17189 0.66 0.999556
Target:  5'- nCCugCcgCGGCGgcGAGcagcGCGCCc -3'
miRNA:   3'- cGGugGuaGUCGCuuCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 18703 0.69 0.9923
Target:  5'- cGgCGCaCGUCGGCGAAGcagagaucgucgggcGcgGGGCGCCc -3'
miRNA:   3'- -CgGUG-GUAGUCGCUUC---------------UuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19381 0.67 0.998351
Target:  5'- aGCCagGCCGUagUAGCGggGcucGGUGAucggcccgugugccGCGCCg -3'
miRNA:   3'- -CGG--UGGUA--GUCGCuuC---UUAUU--------------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19543 0.75 0.885158
Target:  5'- cGUCACCGcCAGCGccGugggGAGCGCCa -3'
miRNA:   3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 19938 0.66 0.999556
Target:  5'- cGCUAgCGUCcugGGCGggGGugGGGCgGCCu -3'
miRNA:   3'- -CGGUgGUAG---UCGCuuCUuaUUUG-CGG- -5'
23847 5' -47.6 NC_005261.1 + 20659 0.67 0.998717
Target:  5'- aCCGCCGguggcggCAGCGGcAGAGUGgaucAGCGUg -3'
miRNA:   3'- cGGUGGUa------GUCGCU-UCUUAU----UUGCGg -5'
23847 5' -47.6 NC_005261.1 + 21779 0.69 0.995543
Target:  5'- aGCCGCCG-CGGCGcGGGc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCuUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 22699 0.68 0.997303
Target:  5'- gGCCcggcgacgagGCCGUCgaggAGcCGGAGGAccAGCGCCa -3'
miRNA:   3'- -CGG----------UGGUAG----UC-GCUUCUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 22828 0.72 0.965698
Target:  5'- cGCCGCCGUUGGCGccgggcucgGGGAAgaacACGUCg -3'
miRNA:   3'- -CGGUGGUAGUCGC---------UUCUUauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 23466 0.71 0.982179
Target:  5'- cGCCagGCCcgCGGCGgcGAGU--GCGCg -3'
miRNA:   3'- -CGG--UGGuaGUCGCuuCUUAuuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 23620 0.69 0.993918
Target:  5'- cGCUGCCGgggcgCGGCGggGGucGGGCGgCu -3'
miRNA:   3'- -CGGUGGUa----GUCGCuuCUuaUUUGCgG- -5'
23847 5' -47.6 NC_005261.1 + 25259 0.67 0.999308
Target:  5'- uCCGCCAUUAgauuuuuucgccGCGAGGGGgcgcggucuGugGCCg -3'
miRNA:   3'- cGGUGGUAGU------------CGCUUCUUau-------UugCGG- -5'
23847 5' -47.6 NC_005261.1 + 25769 0.66 0.999514
Target:  5'- cCCACCcuggggaggacaaggCGGCGAgcAGGAUGgagcucaGGCGCCa -3'
miRNA:   3'- cGGUGGua-------------GUCGCU--UCUUAU-------UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 27647 0.67 0.998717
Target:  5'- cGCCGCCGUCGGgaCGAGGG------GCCc -3'
miRNA:   3'- -CGGUGGUAGUC--GCUUCUuauuugCGG- -5'
23847 5' -47.6 NC_005261.1 + 28636 0.68 0.997303
Target:  5'- gGUgGCCG-CGGgGGAGAGUGacGAgGCCg -3'
miRNA:   3'- -CGgUGGUaGUCgCUUCUUAU--UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 28798 0.7 0.986057
Target:  5'- cGCgGCCG-CGGCGGAGGcagc-CGCCg -3'
miRNA:   3'- -CGgUGGUaGUCGCUUCUuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 28893 0.73 0.935551
Target:  5'- cGCCGCCugcgccCAacGCGGAGGAaguuGACGCCg -3'
miRNA:   3'- -CGGUGGua----GU--CGCUUCUUau--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 29645 0.68 0.997975
Target:  5'- uGCCGCCgGUCGGgGAcgccauggccgcgcAGAacgcgcuGUGGGCGCUg -3'
miRNA:   3'- -CGGUGG-UAGUCgCU--------------UCU-------UAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 30563 0.67 0.999308
Target:  5'- cGCCGCCGgggccUCGGaCGggGAcggGGACGg- -3'
miRNA:   3'- -CGGUGGU-----AGUC-GCuuCUua-UUUGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.