miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 3' -50.3 NC_005261.1 + 93100 0.76 0.674919
Target:  5'- cGUCCGCAUcgcgcGCGUCGUCGcCGGAAAa -3'
miRNA:   3'- uCAGGUGUGu----CGCAGCAGUuGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 47138 0.75 0.696273
Target:  5'- cGUCgCGCACAGCGccggCGUCGGCGGc-- -3'
miRNA:   3'- uCAG-GUGUGUCGCa---GCAGUUGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 108442 0.74 0.788165
Target:  5'- cGUCCcggccgaGCAgcGCGUCGUCGGCGAGGAu -3'
miRNA:   3'- uCAGGug-----UGU--CGCAGCAGUUGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 67980 0.73 0.816367
Target:  5'- gAGUUCGCuuaccGCAGCGUCGUCGcgcacaACGggGu -3'
miRNA:   3'- -UCAGGUG-----UGUCGCAGCAGU------UGCuuUu -5'
23850 3' -50.3 NC_005261.1 + 66109 0.72 0.851322
Target:  5'- cAGcCCGCGCAGCGccuugcccaUCGUCAGCGc--- -3'
miRNA:   3'- -UCaGGUGUGUCGC---------AGCAGUUGCuuuu -5'
23850 3' -50.3 NC_005261.1 + 95826 0.72 0.867507
Target:  5'- cGGUCCuCGCGGCGcUUGUgGGCGGAGu -3'
miRNA:   3'- -UCAGGuGUGUCGC-AGCAgUUGCUUUu -5'
23850 3' -50.3 NC_005261.1 + 93669 0.71 0.882749
Target:  5'- cGGUCCGCggGCGGCGgCGcCGGCGggGc -3'
miRNA:   3'- -UCAGGUG--UGUCGCaGCaGUUGCuuUu -5'
23850 3' -50.3 NC_005261.1 + 94468 0.71 0.910229
Target:  5'- -cUCCGCGuCGGCGUCGUCccGCGGGc- -3'
miRNA:   3'- ucAGGUGU-GUCGCAGCAGu-UGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 99600 0.7 0.916449
Target:  5'- gAGUCCAcCGCgAGCGUCGUCcACa---- -3'
miRNA:   3'- -UCAGGU-GUG-UCGCAGCAGuUGcuuuu -5'
23850 3' -50.3 NC_005261.1 + 57782 0.69 0.943569
Target:  5'- cAGUCC--GCGGCGUCGcgCGGCGGGc- -3'
miRNA:   3'- -UCAGGugUGUCGCAGCa-GUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 49614 0.69 0.943569
Target:  5'- aAGUacaCGCACAGCucGcCGUCGACGAGc- -3'
miRNA:   3'- -UCAg--GUGUGUCG--CaGCAGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 123814 0.69 0.9482
Target:  5'- gAGUCCACcgucuccacuuCGGCGUCGUgCAGCGu--- -3'
miRNA:   3'- -UCAGGUGu----------GUCGCAGCA-GUUGCuuuu -5'
23850 3' -50.3 NC_005261.1 + 87402 0.69 0.9482
Target:  5'- cGUCUcgACGGCGcCGUCGACGGGc- -3'
miRNA:   3'- uCAGGugUGUCGCaGCAGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 94143 0.69 0.952573
Target:  5'- cGUCCAC-CAGCGUCagcgcccggGUC-GCGAAGg -3'
miRNA:   3'- uCAGGUGuGUCGCAG---------CAGuUGCUUUu -5'
23850 3' -50.3 NC_005261.1 + 133053 0.69 0.95669
Target:  5'- cGUgCUGCGCGGCGUUGgCGGCGAGu- -3'
miRNA:   3'- uCA-GGUGUGUCGCAGCaGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 123717 0.69 0.95669
Target:  5'- cGG-CCAUcaGCAGCGUCGUC-GCGGu-- -3'
miRNA:   3'- -UCaGGUG--UGUCGCAGCAGuUGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 41840 0.69 0.95669
Target:  5'- -cUCCugGCAGCGcuugUUGUUAAUGAAAAu -3'
miRNA:   3'- ucAGGugUGUCGC----AGCAGUUGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 67160 0.68 0.964178
Target:  5'- --cCCACGCGGCGgcggCGUCAcACGGc-- -3'
miRNA:   3'- ucaGGUGUGUCGCa---GCAGU-UGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 101143 0.68 0.96756
Target:  5'- gAGgcugCCGCGCGGCGgcgCGcCGccGCGAAGAg -3'
miRNA:   3'- -UCa---GGUGUGUCGCa--GCaGU--UGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 83625 0.68 0.96756
Target:  5'- uGGUCCAgCGCGagguccagcGCGUaCGUCAGCGGc-- -3'
miRNA:   3'- -UCAGGU-GUGU---------CGCA-GCAGUUGCUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.