miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 3' -50.3 NC_005261.1 + 2011 0.66 0.988496
Target:  5'- gGGUCCAC--GGCGUCGaUC-ACGAu-- -3'
miRNA:   3'- -UCAGGUGugUCGCAGC-AGuUGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 12762 0.66 0.993404
Target:  5'- aGGUCgUAgGCGGCGguggcggggggcUCGUCGGCGAGc- -3'
miRNA:   3'- -UCAG-GUgUGUCGC------------AGCAGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 13077 0.67 0.983238
Target:  5'- cGUCCGC-CGGCc-CGUCGGCGGGc- -3'
miRNA:   3'- uCAGGUGuGUCGcaGCAGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 13274 0.68 0.973634
Target:  5'- aGGUCCACGC--UGUUGUUGGCGggGc -3'
miRNA:   3'- -UCAGGUGUGucGCAGCAGUUGCuuUu -5'
23850 3' -50.3 NC_005261.1 + 14054 0.67 0.983238
Target:  5'- cGGUCCGCagGCAggccGCGUCcagggccacGUCGGCGAAGc -3'
miRNA:   3'- -UCAGGUG--UGU----CGCAG---------CAGUUGCUUUu -5'
23850 3' -50.3 NC_005261.1 + 41708 0.67 0.98516
Target:  5'- cGUCCAgcccugcagguuCGCGGgGUUGUUAAUGAAGg -3'
miRNA:   3'- uCAGGU------------GUGUCgCAGCAGUUGCUUUu -5'
23850 3' -50.3 NC_005261.1 + 41840 0.69 0.95669
Target:  5'- -cUCCugGCAGCGcuugUUGUUAAUGAAAAu -3'
miRNA:   3'- ucAGGugUGUCGC----AGCAGUUGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 47138 0.75 0.696273
Target:  5'- cGUCgCGCACAGCGccggCGUCGGCGGc-- -3'
miRNA:   3'- uCAG-GUGUGUCGCa---GCAGUUGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 48821 0.66 0.989928
Target:  5'- cGUCCGCgACGcCGUCGUCGGCc---- -3'
miRNA:   3'- uCAGGUG-UGUcGCAGCAGUUGcuuuu -5'
23850 3' -50.3 NC_005261.1 + 49614 0.69 0.943569
Target:  5'- aAGUacaCGCACAGCucGcCGUCGACGAGc- -3'
miRNA:   3'- -UCAg--GUGUGUCG--CaGCAGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 54366 0.67 0.98691
Target:  5'- aGGUCCGCggGCAGCGgcUCGgggCGcccGCGAAGg -3'
miRNA:   3'- -UCAGGUG--UGUCGC--AGCa--GU---UGCUUUu -5'
23850 3' -50.3 NC_005261.1 + 55584 0.67 0.981134
Target:  5'- cAGUCCGCgGCGGCGUCGcCcauGCGc--- -3'
miRNA:   3'- -UCAGGUG-UGUCGCAGCaGu--UGCuuuu -5'
23850 3' -50.3 NC_005261.1 + 57782 0.69 0.943569
Target:  5'- cAGUCC--GCGGCGUCGcgCGGCGGGc- -3'
miRNA:   3'- -UCAGGugUGUCGCAGCa-GUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 63500 0.68 0.973634
Target:  5'- aGGUCCGCcgagACgGGCGUCG-CGAUGAAc- -3'
miRNA:   3'- -UCAGGUG----UG-UCGCAGCaGUUGCUUuu -5'
23850 3' -50.3 NC_005261.1 + 66109 0.72 0.851322
Target:  5'- cAGcCCGCGCAGCGccuugcccaUCGUCAGCGc--- -3'
miRNA:   3'- -UCaGGUGUGUCGC---------AGCAGUUGCuuuu -5'
23850 3' -50.3 NC_005261.1 + 67160 0.68 0.964178
Target:  5'- --cCCACGCGGCGgcggCGUCAcACGGc-- -3'
miRNA:   3'- ucaGGUGUGUCGCa---GCAGU-UGCUuuu -5'
23850 3' -50.3 NC_005261.1 + 67980 0.73 0.816367
Target:  5'- gAGUUCGCuuaccGCAGCGUCGUCGcgcacaACGggGu -3'
miRNA:   3'- -UCAGGUG-----UGUCGCAGCAGU------UGCuuUu -5'
23850 3' -50.3 NC_005261.1 + 68725 0.67 0.981134
Target:  5'- --cUCACGCGGCGggCGcCGGCGGGAAg -3'
miRNA:   3'- ucaGGUGUGUCGCa-GCaGUUGCUUUU- -5'
23850 3' -50.3 NC_005261.1 + 81421 0.67 0.98516
Target:  5'- cAGgcaCAgGCGGCGUCGUCGGCc---- -3'
miRNA:   3'- -UCag-GUgUGUCGCAGCAGUUGcuuuu -5'
23850 3' -50.3 NC_005261.1 + 81716 0.68 0.97634
Target:  5'- cGGUCCGCgcgcaGCAGCGgcacgCGUCcgcaGugGAAGAc -3'
miRNA:   3'- -UCAGGUG-----UGUCGCa----GCAG----UugCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.