Results 41 - 60 of 1000 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 21779 | 0.8 | 0.09503 |
Target: 5'- aGCCGcCGCGGCgCGGgcCGCCGC-AGCCg -3' miRNA: 3'- gCGGCuGCGCCG-GCU--GCGGCGuUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 105123 | 0.8 | 0.097453 |
Target: 5'- gCGCgGGCGCGggccGCCGGCGCgCGCAGGUCc -3' miRNA: 3'- -GCGgCUGCGC----CGGCUGCG-GCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 81441 | 0.8 | 0.097453 |
Target: 5'- gGCCGcccCGCGGCgGGCGCCGCcAGCa -3' miRNA: 3'- gCGGCu--GCGCCGgCUGCGGCGuUCGg -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 64036 | 0.79 | 0.099935 |
Target: 5'- uCGUCGGCGCGGCUcuGCGCCGCGuggugcGCCa -3' miRNA: 3'- -GCGGCUGCGCCGGc-UGCGGCGUu-----CGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 95788 | 0.79 | 0.099935 |
Target: 5'- gCGCCGGCGCGcugcuaGCCGGCGCCgGCGggGGCUc -3' miRNA: 3'- -GCGGCUGCGC------CGGCUGCGG-CGU--UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 68209 | 0.79 | 0.102476 |
Target: 5'- cCGCCGGCGCGGCCGACaaCgGCGAcCCu -3' miRNA: 3'- -GCGGCUGCGCCGGCUGc-GgCGUUcGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 32315 | 0.79 | 0.102476 |
Target: 5'- cCGCCGcCGCGGCCGcgGCGCCcgGCGuGGCCu -3' miRNA: 3'- -GCGGCuGCGCCGGC--UGCGG--CGU-UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 121191 | 0.79 | 0.102476 |
Target: 5'- gGCCGGgGCcgGGcCCGGgGCCGCGGGCCg -3' miRNA: 3'- gCGGCUgCG--CC-GGCUgCGGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 42209 | 0.79 | 0.102476 |
Target: 5'- gCGCCG-CGCGGgCGcccCGCCGCGAGCUc -3' miRNA: 3'- -GCGGCuGCGCCgGCu--GCGGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 32226 | 0.79 | 0.103509 |
Target: 5'- gGCCGcggcgguggccuucuGCGCGGCCG-CGCUGCugGAGCCg -3' miRNA: 3'- gCGGC---------------UGCGCCGGCuGCGGCG--UUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 54835 | 0.79 | 0.104815 |
Target: 5'- aCGCgGGCagggcuaGCuGCCGGCGCCGCAGGCUg -3' miRNA: 3'- -GCGgCUG-------CGcCGGCUGCGGCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 97158 | 0.79 | 0.105078 |
Target: 5'- gCGCCGGCcCGGCCGGCuggGUCGCGGGCg -3' miRNA: 3'- -GCGGCUGcGCCGGCUG---CGGCGUUCGg -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 1170 | 0.79 | 0.110193 |
Target: 5'- gCGCCGGCccgcgccGCGGCCGGgGCCG-GGGCCg -3' miRNA: 3'- -GCGGCUG-------CGCCGGCUgCGGCgUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 106563 | 0.79 | 0.110469 |
Target: 5'- gGCCGGCGCGcGCCGGCcCCG-GGGCCg -3' miRNA: 3'- gCGGCUGCGC-CGGCUGcGGCgUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 77000 | 0.79 | 0.111577 |
Target: 5'- uCGCCGcGCGCGcgcgccgcccuccucGCCGACGCCG-AGGCCg -3' miRNA: 3'- -GCGGC-UGCGC---------------CGGCUGCGGCgUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 3841 | 0.79 | 0.11326 |
Target: 5'- gCGCUGGCggcaGCGgcGCCGGCGCCGCGcGGCCg -3' miRNA: 3'- -GCGGCUG----CGC--CGGCUGCGGCGU-UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 15730 | 0.79 | 0.11326 |
Target: 5'- aCG-CGACGgGGCCGucCGCgCGCAGGCCg -3' miRNA: 3'- -GCgGCUGCgCCGGCu-GCG-GCGUUCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 31288 | 0.79 | 0.11326 |
Target: 5'- gGCCGAgauCGCGGcCCGcCGCCGCGcggGGCCc -3' miRNA: 3'- gCGGCU---GCGCC-GGCuGCGGCGU---UCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 46734 | 0.79 | 0.11326 |
Target: 5'- aCGCCGGCGCGuGCaCG-UGCCGCA-GCCc -3' miRNA: 3'- -GCGGCUGCGC-CG-GCuGCGGCGUuCGG- -5' |
|||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 105971 | 0.79 | 0.11326 |
Target: 5'- gCGCCcaGCGCGGCguCGACGCCGCccgcgaAGGCCa -3' miRNA: 3'- -GCGGc-UGCGCCG--GCUGCGGCG------UUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home