miRNA display CGI


Results 21 - 40 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 29858 0.82 0.066585
Target:  5'- uCGCCGGcCGCGcggcGCCGGCGCCGCu-GCCg -3'
miRNA:   3'- -GCGGCU-GCGC----CGGCUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 106111 0.82 0.06831
Target:  5'- gGCCGGCGUcGCCGGCGCgCGCGcGCCg -3'
miRNA:   3'- gCGGCUGCGcCGGCUGCG-GCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 109793 0.82 0.06831
Target:  5'- gGCCGcugcuGCGaCGGCCGGCGCCGCuuccGCCg -3'
miRNA:   3'- gCGGC-----UGC-GCCGGCUGCGGCGuu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 30187 0.81 0.075652
Target:  5'- gCGCCGAgGCGGCCGccGCGCUGgAGGCg -3'
miRNA:   3'- -GCGGCUgCGCCGGC--UGCGGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 106229 0.81 0.075652
Target:  5'- cCGCCuGGCGCGGCCGccGCGCCcuacCGGGCCg -3'
miRNA:   3'- -GCGG-CUGCGCCGGC--UGCGGc---GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132959 0.81 0.079601
Target:  5'- gCGCCGACGUGGCCGccuucguCGCCGCGcaCCg -3'
miRNA:   3'- -GCGGCUGCGCCGGCu------GCGGCGUucGG- -5'
23850 5' -62.6 NC_005261.1 + 106661 0.81 0.079601
Target:  5'- uCGCCGGCGCGGUCGuccaGCGCgCGCccgaGGGCCg -3'
miRNA:   3'- -GCGGCUGCGCCGGC----UGCG-GCG----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 102945 0.81 0.079601
Target:  5'- cCGCCGcugcgGCgGCGGCCGcggGCGCCGCGGGCUc -3'
miRNA:   3'- -GCGGC-----UG-CGCCGGC---UGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 33398 0.81 0.081649
Target:  5'- cCGCCGcCGCaGCCGcCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGcCGGCuGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 33434 0.81 0.081649
Target:  5'- cCGCCGcCGCaGCCGcCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGcCGGCuGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 132067 0.8 0.083747
Target:  5'- gGCCGAgguCGCGGCCGccguCGCCGCu-GCCg -3'
miRNA:   3'- gCGGCU---GCGCCGGCu---GCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 105663 0.8 0.083747
Target:  5'- uCGCCGGCGCGGaaGACGCC-CAcGCCc -3'
miRNA:   3'- -GCGGCUGCGCCggCUGCGGcGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 68696 0.8 0.085896
Target:  5'- gGCCGGCGCGGacgaCGGCGgCGCcGGCCc -3'
miRNA:   3'- gCGGCUGCGCCg---GCUGCgGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 102423 0.8 0.085896
Target:  5'- uGCCGcuGCGCGGCCGccuccucggcGCGCCGCccGGCCu -3'
miRNA:   3'- gCGGC--UGCGCCGGC----------UGCGGCGu-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 3409 0.8 0.085896
Target:  5'- cCGCCGGCG-GGCUGAagaGCgCGCGGGCCa -3'
miRNA:   3'- -GCGGCUGCgCCGGCUg--CG-GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 35908 0.8 0.088098
Target:  5'- cCGCCGcggcaGCGCGGCCccGCGCCGCA-GCCc -3'
miRNA:   3'- -GCGGC-----UGCGCCGGc-UGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 33458 0.8 0.088098
Target:  5'- nCGCCGcCGCaGCCGcCGCCGC-AGCCg -3'
miRNA:   3'- -GCGGCuGCGcCGGCuGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 90750 0.8 0.09243
Target:  5'- gCGCUGGCGCGGgacuuccCCGAgGCCGCcgAGGCCg -3'
miRNA:   3'- -GCGGCUGCGCC-------GGCUgCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 20851 0.8 0.092664
Target:  5'- gGCagCGugGCGGCUcuuGCGCCGCGGGCCg -3'
miRNA:   3'- gCG--GCugCGCCGGc--UGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 48448 0.8 0.09503
Target:  5'- uGCgUGGCGCGGCCGGCGCgGuCAAcGCCg -3'
miRNA:   3'- gCG-GCUGCGCCGGCUGCGgC-GUU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.