miRNA display CGI


Results 21 - 40 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 129533 0.66 0.622836
Target:  5'- aGgCG-CGCGGgCuACGCCGCAAGgUg -3'
miRNA:   3'- gCgGCuGCGCCgGcUGCGGCGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 13436 0.66 0.622836
Target:  5'- gCGUCGACcgggugcagGCaGGCCGGCGCCuCGGGgUg -3'
miRNA:   3'- -GCGGCUG---------CG-CCGGCUGCGGcGUUCgG- -5'
23850 5' -62.6 NC_005261.1 + 3343 0.66 0.622836
Target:  5'- gCGCCG-CgGCGcCCGGCGC-GCcGGCCu -3'
miRNA:   3'- -GCGGCuG-CGCcGGCUGCGgCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 118821 0.66 0.622836
Target:  5'- gCGCCcugGGCGCGGCac-UGCCGCucuGCg -3'
miRNA:   3'- -GCGG---CUGCGCCGgcuGCGGCGuu-CGg -5'
23850 5' -62.6 NC_005261.1 + 104035 0.66 0.613096
Target:  5'- gCGCCG-CGCaGGaaGuACuGCCGCAGcGCCu -3'
miRNA:   3'- -GCGGCuGCG-CCggC-UG-CGGCGUU-CGG- -5'
23850 5' -62.6 NC_005261.1 + 83319 0.66 0.613096
Target:  5'- aGCuCGG-GCGGCgCcACGCCGCccGCCg -3'
miRNA:   3'- gCG-GCUgCGCCG-GcUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 80657 0.66 0.613096
Target:  5'- aGCUGGugugcuCGCGGUgcGCGCCGUcgcgGAGCCc -3'
miRNA:   3'- gCGGCU------GCGCCGgcUGCGGCG----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 35124 0.66 0.613096
Target:  5'- cCGCCGGCgGCGucgcaccccGCCcccGCGgCGCAAGCa -3'
miRNA:   3'- -GCGGCUG-CGC---------CGGc--UGCgGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 38640 0.66 0.613096
Target:  5'- cCGCCGACGgugaCGGUgaaagCGGCgGgUGCGGGCCc -3'
miRNA:   3'- -GCGGCUGC----GCCG-----GCUG-CgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 105532 0.66 0.613096
Target:  5'- cCGCCcaccggGACucggGCuGGCCGcACGCgCGCAGGgCCa -3'
miRNA:   3'- -GCGG------CUG----CG-CCGGC-UGCG-GCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 22588 0.66 0.613096
Target:  5'- gGCgGAgGCGGCgcACGCUGCcGGCg -3'
miRNA:   3'- gCGgCUgCGCCGgcUGCGGCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 120631 0.66 0.613096
Target:  5'- uGCUgGugGCGGCCcugugccugcGGCGCaaggCGCGGGCg -3'
miRNA:   3'- gCGG-CugCGCCGG----------CUGCG----GCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 103786 0.66 0.613096
Target:  5'- gGCCG-CG-GGCCGucuucgguguGCGCCGUugcGCCc -3'
miRNA:   3'- gCGGCuGCgCCGGC----------UGCGGCGuu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 89419 0.66 0.613096
Target:  5'- gGCgCGuGCGCGGCCGcCGggcuccCCGCGcccGCCg -3'
miRNA:   3'- gCG-GC-UGCGCCGGCuGC------GGCGUu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 2419 0.66 0.613096
Target:  5'- -cCCG-CGCGGCgGcGgGCCGCGaucucGGCCa -3'
miRNA:   3'- gcGGCuGCGCCGgC-UgCGGCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 73953 0.66 0.613096
Target:  5'- uGCaGACGCgGGgCG-CGCC-CGGGCCg -3'
miRNA:   3'- gCGgCUGCG-CCgGCuGCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 22655 0.66 0.613096
Target:  5'- gCGCUGGCGgcgccUGGgCGGCGCC-CGAGUg -3'
miRNA:   3'- -GCGGCUGC-----GCCgGCUGCGGcGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 128103 0.66 0.613096
Target:  5'- gGCgagCGGCGCGGCgCGGgGUCG--GGCCg -3'
miRNA:   3'- gCG---GCUGCGCCG-GCUgCGGCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 115760 0.66 0.613096
Target:  5'- uCGUCGGCcccgucucgGCGGCguCGACGUaCGCGuAGCCc -3'
miRNA:   3'- -GCGGCUG---------CGCCG--GCUGCG-GCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 117109 0.66 0.613096
Target:  5'- -cCCGACGCGcggcGCUGACcuuGCCGUgucgcucucgAGGCCg -3'
miRNA:   3'- gcGGCUGCGC----CGGCUG---CGGCG----------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.