Results 1 - 20 of 1000 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23850 | 5' | -62.6 | NC_005261.1 | + | 57404 | 0.91 | 0.014327 |
Target: 5'- gCGCCcguGAucCGCGGCCGGCGCCGCGAGCCc -3' miRNA: 3'- -GCGG---CU--GCGCCGGCUGCGGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 12340 | 0.89 | 0.020695 |
Target: 5'- gGCCGGCGCGGCCGcCGCCGCGgcGGCa -3' miRNA: 3'- gCGGCUGCGCCGGCuGCGGCGU--UCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 30331 | 0.88 | 0.025519 |
Target: 5'- uGCCGGCGCGGCUGGCgGCCGCGcucgcGGCCc -3' miRNA: 3'- gCGGCUGCGCCGGCUG-CGGCGU-----UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 44240 | 0.86 | 0.033132 |
Target: 5'- gGCCGcccagcGCGCGGCCGACGCCGCGGcGCg -3' miRNA: 3'- gCGGC------UGCGCCGGCUGCGGCGUU-CGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 45616 | 0.86 | 0.035823 |
Target: 5'- cCGgCGGCGCGGCgCGGCGCgGCGGGCCc -3' miRNA: 3'- -GCgGCUGCGCCG-GCUGCGgCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 34353 | 0.85 | 0.037736 |
Target: 5'- gGCCGACGgGGCCgGGCGCCGCGcggcGCCg -3' miRNA: 3'- gCGGCUGCgCCGG-CUGCGGCGUu---CGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 131764 | 0.85 | 0.038729 |
Target: 5'- gGCCGGCGCGGCgGgcGCGCCGCuGGGCCc -3' miRNA: 3'- gCGGCUGCGCCGgC--UGCGGCG-UUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 50807 | 0.85 | 0.040477 |
Target: 5'- cCGCCGccaugacgggcuccGCGCGGCuUGGCGCCGCGAGCUg -3' miRNA: 3'- -GCGGC--------------UGCGCCG-GCUGCGGCGUUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 77641 | 0.84 | 0.04525 |
Target: 5'- gGCCGGCGCcaucgccgacGGCCGGCGCCuGCAGGCg -3' miRNA: 3'- gCGGCUGCG----------CCGGCUGCGG-CGUUCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 59481 | 0.84 | 0.047653 |
Target: 5'- gCGCCGGCGCGGCCGccGCGCCaGCGgcGGCg -3' miRNA: 3'- -GCGGCUGCGCCGGC--UGCGG-CGU--UCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 97112 | 0.84 | 0.051493 |
Target: 5'- aGCCGGgcCGCGGCCGgagGCGCCGC-GGCCa -3' miRNA: 3'- gCGGCU--GCGCCGGC---UGCGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 51769 | 0.84 | 0.051493 |
Target: 5'- aGCUGGCGCuGGCCGGCGUCGCccugcuGGCCg -3' miRNA: 3'- gCGGCUGCG-CCGGCUGCGGCGu-----UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 75857 | 0.83 | 0.054218 |
Target: 5'- gCGCCGACgGCGGCCccgacGGCGCCGUggGCg -3' miRNA: 3'- -GCGGCUG-CGCCGG-----CUGCGGCGuuCGg -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 97190 | 0.83 | 0.054218 |
Target: 5'- gGCCGGgcCGCGGCCGgaaGCGCCGC-GGCCa -3' miRNA: 3'- gCGGCU--GCGCCGGC---UGCGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 68527 | 0.83 | 0.05857 |
Target: 5'- uGCCGGCGCcGCCGGCGcCCGCGcGCCc -3' miRNA: 3'- gCGGCUGCGcCGGCUGC-GGCGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 67310 | 0.83 | 0.05857 |
Target: 5'- gCGCCGcCGuCGGCCGcCGCCGCGcucAGCCg -3' miRNA: 3'- -GCGGCuGC-GCCGGCuGCGGCGU---UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 70872 | 0.82 | 0.063259 |
Target: 5'- cCGCCGugGCGUGGCCGGCGgUGCAcauGGCCg -3' miRNA: 3'- -GCGGC--UGCGCCGGCUGCgGCGU---UCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 51100 | 0.82 | 0.063259 |
Target: 5'- uCGCCGuCGCGGCCuuuGACGUCGC-GGCCg -3' miRNA: 3'- -GCGGCuGCGCCGG---CUGCGGCGuUCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 31119 | 0.82 | 0.063259 |
Target: 5'- cCGCCGACgGCGGCUucCGCCGCGuGCCg -3' miRNA: 3'- -GCGGCUG-CGCCGGcuGCGGCGUuCGG- -5' |
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23850 | 5' | -62.6 | NC_005261.1 | + | 10489 | 0.82 | 0.064736 |
Target: 5'- cCGCUGcaccggcuuuugcGCGCGGCCGcCGCUGCGGGCCc -3' miRNA: 3'- -GCGGC-------------UGCGCCGGCuGCGGCGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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