miRNA display CGI


Results 1 - 20 of 1000 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 112 0.72 0.291195
Target:  5'- cCGCCGccCGC-GCCGGCGCCGCcccuggugcucgcgGGGCUg -3'
miRNA:   3'- -GCGGCu-GCGcCGGCUGCGGCG--------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 167 0.7 0.387124
Target:  5'- aGuuGGCGgGGCUGGCGCCccugguGCucccgGGGCCa -3'
miRNA:   3'- gCggCUGCgCCGGCUGCGG------CG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 353 0.76 0.171886
Target:  5'- aGcCCGGCGCGGcCCGGCGgCGguGGCg -3'
miRNA:   3'- gC-GGCUGCGCC-GGCUGCgGCguUCGg -5'
23850 5' -62.6 NC_005261.1 + 546 0.69 0.462834
Target:  5'- gGCgGACgGCGGCuCGGcCGCCGCGcGGUg -3'
miRNA:   3'- gCGgCUG-CGCCG-GCU-GCGGCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 620 0.7 0.406512
Target:  5'- uGcCCGACgcaggggauguggcgGCGGCCGccaGCGCCGCGuccccggcGCCg -3'
miRNA:   3'- gC-GGCUG---------------CGCCGGC---UGCGGCGUu-------CGG- -5'
23850 5' -62.6 NC_005261.1 + 1046 0.66 0.622836
Target:  5'- gGCgGGCgGCGGCguuagCGGCGCgGgGGGCUg -3'
miRNA:   3'- gCGgCUG-CGCCG-----GCUGCGgCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1170 0.79 0.110193
Target:  5'- gCGCCGGCccgcgccGCGGCCGGgGCCG-GGGCCg -3'
miRNA:   3'- -GCGGCUG-------CGCCGGCUgCGGCgUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1204 0.75 0.203113
Target:  5'- gGCgCGGCGCGgaccccccGCCGAUGCCGCcgucGCCg -3'
miRNA:   3'- gCG-GCUGCGC--------CGGCUGCGGCGuu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 1263 0.68 0.498892
Target:  5'- uGCCcgGGgGUGacuguGCCGGCGCC-CAGGCCg -3'
miRNA:   3'- gCGG--CUgCGC-----CGGCUGCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1308 0.76 0.167791
Target:  5'- uCGCCGGCgGCGGCacgcgcuccggGACGCCGCcgcGCCg -3'
miRNA:   3'- -GCGGCUG-CGCCGg----------CUGCGGCGuu-CGG- -5'
23850 5' -62.6 NC_005261.1 + 1394 0.7 0.387124
Target:  5'- aCGCCGGgcgcCGCGGCCGcggcgGCGgCGgGGGCg -3'
miRNA:   3'- -GCGGCU----GCGCCGGC-----UGCgGCgUUCGg -5'
23850 5' -62.6 NC_005261.1 + 1475 0.7 0.391913
Target:  5'- aGCa-GCGCGGCCGcgcagaaggccacCGCCGC-GGCCg -3'
miRNA:   3'- gCGgcUGCGCCGGCu------------GCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1524 0.72 0.313141
Target:  5'- gCGCCagcuccaGCGCGcGCCG-C-CCGCAGGCCa -3'
miRNA:   3'- -GCGGc------UGCGC-CGGCuGcGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1577 0.72 0.299694
Target:  5'- gCGCCGAgcccccaGCGGuuGGCGgCGCGguggcuGGCCg -3'
miRNA:   3'- -GCGGCUg------CGCCggCUGCgGCGU------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 1653 0.73 0.27415
Target:  5'- gCGCCGcgcucuGCGCGGCCauguccuuGCGCCcGuCGAGCCg -3'
miRNA:   3'- -GCGGC------UGCGCCGGc-------UGCGG-C-GUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1823 0.69 0.419772
Target:  5'- aGCCGcgcguaaGCGGCCucGGCGCgCGCGAaggcGCCg -3'
miRNA:   3'- gCGGCug-----CGCCGG--CUGCG-GCGUU----CGG- -5'
23850 5' -62.6 NC_005261.1 + 1886 0.75 0.189166
Target:  5'- aGCaCGGCGCGcGCCagcgcGCGCCGCucAGGCCa -3'
miRNA:   3'- gCG-GCUGCGC-CGGc----UGCGGCG--UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 1921 0.68 0.480699
Target:  5'- gCGCgCGGCGCa-CUG-CGCCGCGGGCa -3'
miRNA:   3'- -GCG-GCUGCGccGGCuGCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 2040 0.78 0.131439
Target:  5'- cCGCCGcgcCGCGGCCa--GCCGCAGGCa -3'
miRNA:   3'- -GCGGCu--GCGCCGGcugCGGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 2080 0.67 0.555141
Target:  5'- gCGCCG-CGgaaGGCCaggucccGCGUCGCGAGCa -3'
miRNA:   3'- -GCGGCuGCg--CCGGc------UGCGGCGUUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.