miRNA display CGI


Results 1 - 20 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 127213 0.66 0.632583
Target:  5'- aGCgGcGCGCGGCUuaaGCCGCGcgcgucgaaaaAGCCu -3'
miRNA:   3'- gCGgC-UGCGCCGGcugCGGCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 75857 0.83 0.054218
Target:  5'- gCGCCGACgGCGGCCccgacGGCGCCGUggGCg -3'
miRNA:   3'- -GCGGCUG-CGCCGG-----CUGCGGCGuuCGg -5'
23850 5' -62.6 NC_005261.1 + 97190 0.83 0.054218
Target:  5'- gGCCGGgcCGCGGCCGgaaGCGCCGC-GGCCa -3'
miRNA:   3'- gCGGCU--GCGCCGGC---UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 68527 0.83 0.05857
Target:  5'- uGCCGGCGCcGCCGGCGcCCGCGcGCCc -3'
miRNA:   3'- gCGGCUGCGcCGGCUGC-GGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 67310 0.83 0.05857
Target:  5'- gCGCCGcCGuCGGCCGcCGCCGCGcucAGCCg -3'
miRNA:   3'- -GCGGCuGC-GCCGGCuGCGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 31119 0.82 0.063259
Target:  5'- cCGCCGACgGCGGCUucCGCCGCGuGCCg -3'
miRNA:   3'- -GCGGCUG-CGCCGGcuGCGGCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 51100 0.82 0.063259
Target:  5'- uCGCCGuCGCGGCCuuuGACGUCGC-GGCCg -3'
miRNA:   3'- -GCGGCuGCGCCGG---CUGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 70872 0.82 0.063259
Target:  5'- cCGCCGugGCGUGGCCGGCGgUGCAcauGGCCg -3'
miRNA:   3'- -GCGGC--UGCGCCGGCUGCgGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 10489 0.82 0.064736
Target:  5'- cCGCUGcaccggcuuuugcGCGCGGCCGcCGCUGCGGGCCc -3'
miRNA:   3'- -GCGGC-------------UGCGCCGGCuGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 97112 0.84 0.051493
Target:  5'- aGCCGGgcCGCGGCCGgagGCGCCGC-GGCCa -3'
miRNA:   3'- gCGGCU--GCGCCGGC---UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 51769 0.84 0.051493
Target:  5'- aGCUGGCGCuGGCCGGCGUCGCccugcuGGCCg -3'
miRNA:   3'- gCGGCUGCG-CCGGCUGCGGCGu-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 59481 0.84 0.047653
Target:  5'- gCGCCGGCGCGGCCGccGCGCCaGCGgcGGCg -3'
miRNA:   3'- -GCGGCUGCGCCGGC--UGCGG-CGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 12340 0.89 0.020695
Target:  5'- gGCCGGCGCGGCCGcCGCCGCGgcGGCa -3'
miRNA:   3'- gCGGCUGCGCCGGCuGCGGCGU--UCGg -5'
23850 5' -62.6 NC_005261.1 + 30331 0.88 0.025519
Target:  5'- uGCCGGCGCGGCUGGCgGCCGCGcucgcGGCCc -3'
miRNA:   3'- gCGGCUGCGCCGGCUG-CGGCGU-----UCGG- -5'
23850 5' -62.6 NC_005261.1 + 44240 0.86 0.033132
Target:  5'- gGCCGcccagcGCGCGGCCGACGCCGCGGcGCg -3'
miRNA:   3'- gCGGC------UGCGCCGGCUGCGGCGUU-CGg -5'
23850 5' -62.6 NC_005261.1 + 45616 0.86 0.035823
Target:  5'- cCGgCGGCGCGGCgCGGCGCgGCGGGCCc -3'
miRNA:   3'- -GCgGCUGCGCCG-GCUGCGgCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 34353 0.85 0.037736
Target:  5'- gGCCGACGgGGCCgGGCGCCGCGcggcGCCg -3'
miRNA:   3'- gCGGCUGCgCCGG-CUGCGGCGUu---CGG- -5'
23850 5' -62.6 NC_005261.1 + 131764 0.85 0.038729
Target:  5'- gGCCGGCGCGGCgGgcGCGCCGCuGGGCCc -3'
miRNA:   3'- gCGGCUGCGCCGgC--UGCGGCG-UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 50807 0.85 0.040477
Target:  5'- cCGCCGccaugacgggcuccGCGCGGCuUGGCGCCGCGAGCUg -3'
miRNA:   3'- -GCGGC--------------UGCGCCG-GCUGCGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 77641 0.84 0.04525
Target:  5'- gGCCGGCGCcaucgccgacGGCCGGCGCCuGCAGGCg -3'
miRNA:   3'- gCGGCUGCG----------CCGGCUGCGG-CGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.