miRNA display CGI


Results 1 - 20 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 127361 0.66 0.59269
Target:  5'- gGCCcGCGUGGCUagGAUGUCGUuggcggcggcgagGAGCCc -3'
miRNA:   3'- gCGGcUGCGCCGG--CUGCGGCG-------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 133748 0.66 0.59366
Target:  5'- aCGCC-ACGCGcGCgauCGACGCCcCGuGCCu -3'
miRNA:   3'- -GCGGcUGCGC-CG---GCUGCGGcGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 126536 0.66 0.59366
Target:  5'- cCGCCG-CGCcucGGCCacGCGCCGCc-GUCg -3'
miRNA:   3'- -GCGGCuGCG---CCGGc-UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 61236 0.66 0.59366
Target:  5'- gCGuUCGGCGCGaGCuCGACucgcugGCCGCcuccgGGGCCg -3'
miRNA:   3'- -GC-GGCUGCGC-CG-GCUG------CGGCG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 81753 0.66 0.59366
Target:  5'- aGaCgGACGCGaa-GACGgCGCGGGCCa -3'
miRNA:   3'- gC-GgCUGCGCcggCUGCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 14285 0.66 0.59366
Target:  5'- gGCUGGgGCcaaGGCCGGCcccgaCCGguAGCCc -3'
miRNA:   3'- gCGGCUgCG---CCGGCUGc----GGCguUCGG- -5'
23850 5' -62.6 NC_005261.1 + 116662 0.66 0.59269
Target:  5'- cCGCCGAccugcucCGCGgcGCCGGCccaaUCGCGAGCg -3'
miRNA:   3'- -GCGGCU-------GCGC--CGGCUGc---GGCGUUCGg -5'
23850 5' -62.6 NC_005261.1 + 74830 0.66 0.59366
Target:  5'- cCGCCGugcuCGCGGaCCugggGAgGCgGCGcGCCg -3'
miRNA:   3'- -GCGGCu---GCGCC-GG----CUgCGgCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 67244 0.66 0.59366
Target:  5'- uCGCaGACGaGGuCCGccguguACGCCGCcAGCCc -3'
miRNA:   3'- -GCGgCUGCgCC-GGC------UGCGGCGuUCGG- -5'
23850 5' -62.6 NC_005261.1 + 126936 0.66 0.59366
Target:  5'- aGCa-GCGCGGCCaggGGCGCCGgGcGCg -3'
miRNA:   3'- gCGgcUGCGCCGG---CUGCGGCgUuCGg -5'
23850 5' -62.6 NC_005261.1 + 68880 0.66 0.59366
Target:  5'- gCGCCGucguGCGCuGcGCgGACGCCGUcguccugaaGAGCg -3'
miRNA:   3'- -GCGGC----UGCG-C-CGgCUGCGGCG---------UUCGg -5'
23850 5' -62.6 NC_005261.1 + 58130 0.66 0.59366
Target:  5'- uGCCGAgCGUGGCCaccgccACGUagaucuucacgCGCGAGUCg -3'
miRNA:   3'- gCGGCU-GCGCCGGc-----UGCG-----------GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 12789 0.66 0.59366
Target:  5'- uCGUCGGCGagcucgucGUCGGCGUCGCu-GCCg -3'
miRNA:   3'- -GCGGCUGCgc------CGGCUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 82658 0.66 0.59366
Target:  5'- aGCaCG-CGCGGauGAgCGCCuCGAGCCg -3'
miRNA:   3'- gCG-GCuGCGCCggCU-GCGGcGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 127213 0.66 0.632583
Target:  5'- aGCgGcGCGCGGCUuaaGCCGCGcgcgucgaaaaAGCCu -3'
miRNA:   3'- gCGgC-UGCGCCGGcugCGGCGU-----------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 98346 0.66 0.59366
Target:  5'- uGUCGACGCGGgggcggggGugGgCGCGGGCUc -3'
miRNA:   3'- gCGGCUGCGCCgg------CugCgGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 72231 0.66 0.59366
Target:  5'- cCGCCGGC-CGGCgG-UGCgCGCAaAGUCg -3'
miRNA:   3'- -GCGGCUGcGCCGgCuGCG-GCGU-UCGG- -5'
23850 5' -62.6 NC_005261.1 + 10103 0.66 0.59269
Target:  5'- gCGCCccGGCaGCGGCggCGAcagccaccaccacCGCCGCcauGAGCCa -3'
miRNA:   3'- -GCGG--CUG-CGCCG--GCU-------------GCGGCG---UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 126247 0.66 0.59269
Target:  5'- aGCCGcCGCaGCUc-CGCCGCGuccaagaAGCCg -3'
miRNA:   3'- gCGGCuGCGcCGGcuGCGGCGU-------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 41098 0.66 0.59366
Target:  5'- aGUCGAC-CGcGUCGucCGCgGCGGGCCc -3'
miRNA:   3'- gCGGCUGcGC-CGGCu-GCGgCGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.