miRNA display CGI


Results 1 - 20 of 1000 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23850 5' -62.6 NC_005261.1 + 138217 0.69 0.462834
Target:  5'- gGCgGACgGCGGCuCGGcCGCCGCGcGGUg -3'
miRNA:   3'- gCGgCUG-CGCCG-GCU-GCGGCGU-UCGg -5'
23850 5' -62.6 NC_005261.1 + 138024 0.76 0.171886
Target:  5'- aGcCCGGCGCGGcCCGGCGgCGguGGCg -3'
miRNA:   3'- gC-GGCUGCGCC-GGCUGCgGCguUCGg -5'
23850 5' -62.6 NC_005261.1 + 137850 0.7 0.387124
Target:  5'- aGuuGGCGgGGCUGGCGCCccugguGCucccgGGGCCa -3'
miRNA:   3'- gCggCUGCgCCGGCUGCGG------CG-----UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 137795 0.72 0.291195
Target:  5'- cCGCCGccCGC-GCCGGCGCCGCcccuggugcucgcgGGGCUg -3'
miRNA:   3'- -GCGGCu-GCGcCGGCUGCGGCG--------------UUCGG- -5'
23850 5' -62.6 NC_005261.1 + 137000 0.68 0.508103
Target:  5'- gGUCGAUcguGCGGCCGgagaGCGCgGCcAGCa -3'
miRNA:   3'- gCGGCUG---CGCCGGC----UGCGgCGuUCGg -5'
23850 5' -62.6 NC_005261.1 + 136917 0.76 0.170648
Target:  5'- gGCCG-CGCGGCCG-CGgCGCAuguggugguacaugGGCCg -3'
miRNA:   3'- gCGGCuGCGCCGGCuGCgGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 136879 0.67 0.583977
Target:  5'- gCGuaGGCGCGGCCGAUGaaGUGuacuGGCg -3'
miRNA:   3'- -GCggCUGCGCCGGCUGCggCGU----UCGg -5'
23850 5' -62.6 NC_005261.1 + 136596 0.69 0.43671
Target:  5'- aCGcCCGGCGCaGCguggagCGGCGCgCGCGcGCCg -3'
miRNA:   3'- -GC-GGCUGCGcCG------GCUGCG-GCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 136405 0.7 0.395128
Target:  5'- gGCgGACGUGGUguCGGagccgcaGUCGCAGGCCc -3'
miRNA:   3'- gCGgCUGCGCCG--GCUg------CGGCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 135843 0.68 0.477997
Target:  5'- gGCUuGCGUGGCgggcuucauCGACGCCuuggacacgcacaaGCAGGCCu -3'
miRNA:   3'- gCGGcUGCGCCG---------GCUGCGG--------------CGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 135757 0.7 0.395128
Target:  5'- aGCCG-CGCGGugcgcuCCGGCGCagagCGCGuGCCg -3'
miRNA:   3'- gCGGCuGCGCC------GGCUGCG----GCGUuCGG- -5'
23850 5' -62.6 NC_005261.1 + 135584 0.69 0.43671
Target:  5'- -aUCGugGCcacGGCCGGCGCCGU--GCUg -3'
miRNA:   3'- gcGGCugCG---CCGGCUGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 135514 0.67 0.574326
Target:  5'- aGCCGACGaGuGCCuGACGUggUGCAAGUUc -3'
miRNA:   3'- gCGGCUGCgC-CGG-CUGCG--GCGUUCGG- -5'
23850 5' -62.6 NC_005261.1 + 135441 0.72 0.313141
Target:  5'- aCGCCGcccAgGCGGCgCgGGCGCUGCGGGaCCu -3'
miRNA:   3'- -GCGGC---UgCGCCG-G-CUGCGGCGUUC-GG- -5'
23850 5' -62.6 NC_005261.1 + 135205 0.67 0.549421
Target:  5'- gGCCGAgGCggcgcagagggccacGGCCGagcGCGUCGCc-GCCg -3'
miRNA:   3'- gCGGCUgCG---------------CCGGC---UGCGGCGuuCGG- -5'
23850 5' -62.6 NC_005261.1 + 135135 0.7 0.387124
Target:  5'- aGCgCGGCGgGGgagaCGACGCCGCcuccGCCc -3'
miRNA:   3'- gCG-GCUGCgCCg---GCUGCGGCGuu--CGG- -5'
23850 5' -62.6 NC_005261.1 + 135034 0.75 0.203113
Target:  5'- gCGgCGGCGaGGCCGACGCCuGCGgcggcagcGGCCc -3'
miRNA:   3'- -GCgGCUGCgCCGGCUGCGG-CGU--------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 135002 0.77 0.138075
Target:  5'- gCGCCccuGGCGCGGCgGGC-CCGCAcgcGGCCg -3'
miRNA:   3'- -GCGG---CUGCGCCGgCUGcGGCGU---UCGG- -5'
23850 5' -62.6 NC_005261.1 + 134949 0.67 0.533318
Target:  5'- aGCCGAUggGCGagggcGCCGGCGaCGCAgacggcgaggacggGGCCg -3'
miRNA:   3'- gCGGCUG--CGC-----CGGCUGCgGCGU--------------UCGG- -5'
23850 5' -62.6 NC_005261.1 + 134568 0.71 0.356192
Target:  5'- gCGgCGcCGCGGCUG-CGCaggGCGGGCCu -3'
miRNA:   3'- -GCgGCuGCGCCGGCuGCGg--CGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.