miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 61706 0.66 0.711446
Target:  5'- cAUCcgCCcgCCcgugugccccccccaUCCCCGgCUCCCUUGUg -3'
miRNA:   3'- -UAGa-GGuaGG---------------AGGGGUgGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 114881 0.71 0.383467
Target:  5'- uUUUCCcuuUUCUCCCCcuuCC-CCCCUGCu -3'
miRNA:   3'- uAGAGGu--AGGAGGGGu--GGaGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 82529 0.71 0.391706
Target:  5'- aGUCggccCCAUCCUCgCCCcCCUCCUCgcccGCg -3'
miRNA:   3'- -UAGa---GGUAGGAG-GGGuGGAGGGGa---CG- -5'
23851 3' -60.2 NC_005261.1 + 3136 0.7 0.434582
Target:  5'- cGUCcCCGUCCccgUCCCCGuCCgaggCCCCgGCg -3'
miRNA:   3'- -UAGaGGUAGG---AGGGGU-GGa---GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 33221 0.7 0.443479
Target:  5'- cUCUCCcucccCCUCCCUccucuCCUCCCC-GCg -3'
miRNA:   3'- uAGAGGua---GGAGGGGu----GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 13769 0.7 0.443479
Target:  5'- -cCUUCccCUUCCCCGcCCUCgCCCUGCc -3'
miRNA:   3'- uaGAGGuaGGAGGGGU-GGAG-GGGACG- -5'
23851 3' -60.2 NC_005261.1 + 24872 0.7 0.461576
Target:  5'- -cCUCCcacggCCugUCCCCGCC-CCCUUGCc -3'
miRNA:   3'- uaGAGGua---GG--AGGGGUGGaGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 3199 0.69 0.480054
Target:  5'- -cCUCCcucUCCUCCuCCuCCUCCCCcucGCu -3'
miRNA:   3'- uaGAGGu--AGGAGG-GGuGGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 2871 0.69 0.498887
Target:  5'- uUCUUCcUCCUCCuCCuCCUCCUCgGCc -3'
miRNA:   3'- uAGAGGuAGGAGG-GGuGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 101840 0.71 0.375344
Target:  5'- gAUCUCCG-CCgcgCgCCCGCCggCCgCCUGCa -3'
miRNA:   3'- -UAGAGGUaGGa--G-GGGUGGa-GG-GGACG- -5'
23851 3' -60.2 NC_005261.1 + 16357 0.71 0.375344
Target:  5'- -gCUCCGUCCucuUCCCCGCCgccuUCUCCguggGCc -3'
miRNA:   3'- uaGAGGUAGG---AGGGGUGG----AGGGGa---CG- -5'
23851 3' -60.2 NC_005261.1 + 3271 0.72 0.351682
Target:  5'- cGUCcUCGUCCUCCCCGuCCUCCUCcagGUc -3'
miRNA:   3'- -UAGaGGUAGGAGGGGU-GGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 81398 0.78 0.149046
Target:  5'- -gCUCCcggCCUCCCCAgCUCCCCcagGCa -3'
miRNA:   3'- uaGAGGua-GGAGGGGUgGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 5694 0.76 0.191319
Target:  5'- -cCUCCcucUCCUCCCCGCCggcCCCCUuucGCg -3'
miRNA:   3'- uaGAGGu--AGGAGGGGUGGa--GGGGA---CG- -5'
23851 3' -60.2 NC_005261.1 + 52093 0.75 0.216179
Target:  5'- -cCUCCcccCUUCCCCcCCUCUCCUGCg -3'
miRNA:   3'- uaGAGGua-GGAGGGGuGGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 79011 0.74 0.25558
Target:  5'- -aCUCC-UCCUCCCCcuCCUCgCCCgggGCg -3'
miRNA:   3'- uaGAGGuAGGAGGGGu-GGAG-GGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 28333 0.73 0.307602
Target:  5'- cUCUCCcucCCUCCCUcCCUCCCCcGUc -3'
miRNA:   3'- uAGAGGua-GGAGGGGuGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 753 0.72 0.329097
Target:  5'- cUCUCCcgCCUCCCguuucCCUCCCCUc- -3'
miRNA:   3'- uAGAGGuaGGAGGGgu---GGAGGGGAcg -5'
23851 3' -60.2 NC_005261.1 + 105042 0.72 0.329097
Target:  5'- -gCUCCcacccccgccCCUCCCCAgcCCUCCCCgGCa -3'
miRNA:   3'- uaGAGGua--------GGAGGGGU--GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 5023 0.72 0.351682
Target:  5'- uUCUCCggGUCCUCCUCuuccuCCUCCCCc-- -3'
miRNA:   3'- uAGAGG--UAGGAGGGGu----GGAGGGGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.