miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 578 0.67 0.647504
Target:  5'- -aCUaCGcUCCUCCCC-CCUCCCCcucUGUu -3'
miRNA:   3'- uaGAgGU-AGGAGGGGuGGAGGGG---ACG- -5'
23851 3' -60.2 NC_005261.1 + 699 0.67 0.597092
Target:  5'- cAUCggcgCCccCCUCCCCcCUUCCCCggucgGCc -3'
miRNA:   3'- -UAGa---GGuaGGAGGGGuGGAGGGGa----CG- -5'
23851 3' -60.2 NC_005261.1 + 753 0.72 0.329097
Target:  5'- cUCUCCcgCCUCCCguuucCCUCCCCUc- -3'
miRNA:   3'- uAGAGGuaGGAGGGgu---GGAGGGGAcg -5'
23851 3' -60.2 NC_005261.1 + 778 0.68 0.587057
Target:  5'- --nUCC--CCUCCCCGCCcccCCCCcGCg -3'
miRNA:   3'- uagAGGuaGGAGGGGUGGa--GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 2871 0.69 0.498887
Target:  5'- uUCUUCcUCCUCCuCCuCCUCCUCgGCc -3'
miRNA:   3'- uAGAGGuAGGAGG-GGuGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 3136 0.7 0.434582
Target:  5'- cGUCcCCGUCCccgUCCCCGuCCgaggCCCCgGCg -3'
miRNA:   3'- -UAGaGGUAGG---AGGGGU-GGa---GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 3199 0.69 0.480054
Target:  5'- -cCUCCcucUCCUCCuCCuCCUCCCCcucGCu -3'
miRNA:   3'- uaGAGGu--AGGAGG-GGuGGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 3271 0.72 0.351682
Target:  5'- cGUCcUCGUCCUCCCCGuCCUCCUCcagGUc -3'
miRNA:   3'- -UAGaGGUAGGAGGGGU-GGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 5023 0.72 0.351682
Target:  5'- uUCUCCggGUCCUCCUCuuccuCCUCCCCc-- -3'
miRNA:   3'- uAGAGG--UAGGAGGGGu----GGAGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 5694 0.76 0.191319
Target:  5'- -cCUCCcucUCCUCCCCGCCggcCCCCUuucGCg -3'
miRNA:   3'- uaGAGGu--AGGAGGGGUGGa--GGGGA---CG- -5'
23851 3' -60.2 NC_005261.1 + 5992 0.67 0.617232
Target:  5'- cGUCUCCGcUCCUCCCgCGgCgagggCUCCgGCg -3'
miRNA:   3'- -UAGAGGU-AGGAGGG-GUgGa----GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 6497 0.67 0.617232
Target:  5'- -cCUUCAcccuUCCcccuuUCCCCcCCUCCgCCUGCc -3'
miRNA:   3'- uaGAGGU----AGG-----AGGGGuGGAGG-GGACG- -5'
23851 3' -60.2 NC_005261.1 + 6538 0.68 0.557167
Target:  5'- -gCUCCccuuUCCUuCCCCACUUaccgcCCCUUGCc -3'
miRNA:   3'- uaGAGGu---AGGA-GGGGUGGA-----GGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 6697 0.67 0.597092
Target:  5'- uUCUCC-UCCcCCCCGCCagCCaUUGCc -3'
miRNA:   3'- uAGAGGuAGGaGGGGUGGagGG-GACG- -5'
23851 3' -60.2 NC_005261.1 + 6989 0.67 0.637414
Target:  5'- cUCUCUuUCCacuuUCCCCACCcCCCCc-- -3'
miRNA:   3'- uAGAGGuAGG----AGGGGUGGaGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 7930 0.69 0.508426
Target:  5'- -gCUCCAUCCUgCUCGCCg-CCUUGUc -3'
miRNA:   3'- uaGAGGUAGGAgGGGUGGagGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 10080 0.67 0.607153
Target:  5'- -cUUCCAgccgCCcgacCCCCGCCgcgCCCCgGCa -3'
miRNA:   3'- uaGAGGUa---GGa---GGGGUGGa--GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 10718 0.69 0.498887
Target:  5'- -cCUCCGggccccccucuUCCUCCgCCGCCUCCUCccgGUc -3'
miRNA:   3'- uaGAGGU-----------AGGAGG-GGUGGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 11150 0.67 0.637414
Target:  5'- cUCUCCc-CCUCCCCuccccguaucucGCCgcggCCCCgGCc -3'
miRNA:   3'- uAGAGGuaGGAGGGG------------UGGa---GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 13769 0.7 0.443479
Target:  5'- -cCUUCccCUUCCCCGcCCUCgCCCUGCc -3'
miRNA:   3'- uaGAGGuaGGAGGGGU-GGAG-GGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.