miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 119822 0.67 0.607153
Target:  5'- cAUCUUCc-CCUCgCCCGCCgaCCCCgGCa -3'
miRNA:   3'- -UAGAGGuaGGAG-GGGUGGa-GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 118527 0.67 0.637414
Target:  5'- ----gCGcCCUgCCCCGCCgaCCCCUGCg -3'
miRNA:   3'- uagagGUaGGA-GGGGUGGa-GGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 115884 0.68 0.567088
Target:  5'- aAUCUCCcucgccgccUCCUCCCCGCCgUCgUCaGCg -3'
miRNA:   3'- -UAGAGGu--------AGGAGGGGUGG-AGgGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 114881 0.71 0.383467
Target:  5'- uUUUCCcuuUUCUCCCCcuuCC-CCCCUGCu -3'
miRNA:   3'- uAGAGGu--AGGAGGGGu--GGaGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 114715 0.66 0.687661
Target:  5'- cUCgcugCUAUCCa-CCUGCCUCCUCUGUu -3'
miRNA:   3'- uAGa---GGUAGGagGGGUGGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 114421 0.67 0.617232
Target:  5'- uUCUCC-UCCUCCUucgcggcgauCGCCUa-CCUGCg -3'
miRNA:   3'- uAGAGGuAGGAGGG----------GUGGAggGGACG- -5'
23851 3' -60.2 NC_005261.1 + 105042 0.72 0.329097
Target:  5'- -gCUCCcacccccgccCCUCCCCAgcCCUCCCCgGCa -3'
miRNA:   3'- uaGAGGua--------GGAGGGGU--GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 102642 0.68 0.587057
Target:  5'- -gCUUCGUCCgcggCCCgcagCACCUCCUCcGCg -3'
miRNA:   3'- uaGAGGUAGGa---GGG----GUGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 102404 0.66 0.666634
Target:  5'- cUCgcgCCAgcgcUCCUCCugccgcugcgcggCCGCCUCCUCgGCg -3'
miRNA:   3'- uAGa--GGU----AGGAGG-------------GGUGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 101840 0.71 0.375344
Target:  5'- gAUCUCCG-CCgcgCgCCCGCCggCCgCCUGCa -3'
miRNA:   3'- -UAGAGGUaGGa--G-GGGUGGa-GG-GGACG- -5'
23851 3' -60.2 NC_005261.1 + 86719 0.66 0.667639
Target:  5'- --gUCCAgCUUCgCCGCCUCguccgccgcgCCCUGCa -3'
miRNA:   3'- uagAGGUaGGAGgGGUGGAG----------GGGACG- -5'
23851 3' -60.2 NC_005261.1 + 83973 0.66 0.707504
Target:  5'- uUCUCCcccUCUCCCCcCCUuucCCCCUcccGCg -3'
miRNA:   3'- uAGAGGua-GGAGGGGuGGA---GGGGA---CG- -5'
23851 3' -60.2 NC_005261.1 + 82529 0.71 0.391706
Target:  5'- aGUCggccCCAUCCUCgCCCcCCUCCUCgcccGCg -3'
miRNA:   3'- -UAGa---GGUAGGAG-GGGuGGAGGGGa---CG- -5'
23851 3' -60.2 NC_005261.1 + 81398 0.78 0.149046
Target:  5'- -gCUCCcggCCUCCCCAgCUCCCCcagGCa -3'
miRNA:   3'- uaGAGGua-GGAGGGGUgGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 79011 0.74 0.25558
Target:  5'- -aCUCC-UCCUCCCCcuCCUCgCCCgggGCg -3'
miRNA:   3'- uaGAGGuAGGAGGGGu-GGAG-GGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 62027 0.66 0.697609
Target:  5'- cGUCUgCCGUCCUCCCgCGgCUCggCCgGCu -3'
miRNA:   3'- -UAGA-GGUAGGAGGG-GUgGAGg-GGaCG- -5'
23851 3' -60.2 NC_005261.1 + 61706 0.66 0.711446
Target:  5'- cAUCcgCCcgCCcgugugccccccccaUCCCCGgCUCCCUUGUg -3'
miRNA:   3'- -UAGa-GGuaGG---------------AGGGGUgGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 52093 0.75 0.216179
Target:  5'- -cCUCCcccCUUCCCCcCCUCUCCUGCg -3'
miRNA:   3'- uaGAGGua-GGAGGGGuGGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 45910 0.66 0.656574
Target:  5'- cUCgCCGUCgUCCUCGCCcucgccgUCCCCgccGCg -3'
miRNA:   3'- uAGaGGUAGgAGGGGUGG-------AGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 39572 0.66 0.697609
Target:  5'- --gUCUGUCCcCCUCucCCUCCCCaGCg -3'
miRNA:   3'- uagAGGUAGGaGGGGu-GGAGGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.