miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 14599 0.67 0.597092
Target:  5'- ---cCCGUcCCUCuCCCACC-CCCCgccGCg -3'
miRNA:   3'- uagaGGUA-GGAG-GGGUGGaGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 15101 0.66 0.697609
Target:  5'- gGUCUCCGacgUCUCCCCGgCCUgaUCCgGCg -3'
miRNA:   3'- -UAGAGGUa--GGAGGGGU-GGAg-GGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 16325 0.68 0.557167
Target:  5'- -cCUCCc-CCUCgCCGCCggUCUCCUGCc -3'
miRNA:   3'- uaGAGGuaGGAGgGGUGG--AGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 16357 0.71 0.375344
Target:  5'- -gCUCCGUCCucuUCCCCGCCgccuUCUCCguggGCc -3'
miRNA:   3'- uaGAGGUAGG---AGGGGUGG----AGGGGa---CG- -5'
23851 3' -60.2 NC_005261.1 + 22275 0.68 0.537481
Target:  5'- uUUUCCcUCUUCCgCCGCCcCCCCcGCc -3'
miRNA:   3'- uAGAGGuAGGAGG-GGUGGaGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 22369 0.69 0.498887
Target:  5'- cGUCUUC-UCCUCCCUGCCcucccUCCCCa-- -3'
miRNA:   3'- -UAGAGGuAGGAGGGGUGG-----AGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 22406 1.09 0.000903
Target:  5'- uAUCUCCAUCCUCCCCACCUCCCCUGCg -3'
miRNA:   3'- -UAGAGGUAGGAGGGGUGGAGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 24460 0.66 0.657581
Target:  5'- -gCUCCGcgcUCCUUCCCAgCUCCagUGUg -3'
miRNA:   3'- uaGAGGU---AGGAGGGGUgGAGGggACG- -5'
23851 3' -60.2 NC_005261.1 + 24872 0.7 0.461576
Target:  5'- -cCUCCcacggCCugUCCCCGCC-CCCUUGCc -3'
miRNA:   3'- uaGAGGua---GG--AGGGGUGGaGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 25726 0.66 0.697609
Target:  5'- cUCUCCccCCUCuCCCACCgggCCgCgcucgGCg -3'
miRNA:   3'- uAGAGGuaGGAG-GGGUGGa--GGgGa----CG- -5'
23851 3' -60.2 NC_005261.1 + 25928 0.67 0.627321
Target:  5'- uUCUUUggCCcugCCCCGCCUCCCgUacGCa -3'
miRNA:   3'- uAGAGGuaGGa--GGGGUGGAGGGgA--CG- -5'
23851 3' -60.2 NC_005261.1 + 26382 0.67 0.627321
Target:  5'- cUCUCC-UCCUCCCC-CUUUUCCguucucGCg -3'
miRNA:   3'- uAGAGGuAGGAGGGGuGGAGGGGa-----CG- -5'
23851 3' -60.2 NC_005261.1 + 26412 0.68 0.557167
Target:  5'- cUCUCUcUCC-CCCCuucUCUCCCuCUGCc -3'
miRNA:   3'- uAGAGGuAGGaGGGGu--GGAGGG-GACG- -5'
23851 3' -60.2 NC_005261.1 + 26539 0.69 0.508426
Target:  5'- -cCUCCcccCUUCUCCGCCUCCCugacuCUGCc -3'
miRNA:   3'- uaGAGGua-GGAGGGGUGGAGGG-----GACG- -5'
23851 3' -60.2 NC_005261.1 + 26581 0.68 0.547296
Target:  5'- -cCUCC-UCCUCCuCCuuCUCCUCUGg -3'
miRNA:   3'- uaGAGGuAGGAGG-GGugGAGGGGACg -5'
23851 3' -60.2 NC_005261.1 + 28060 0.67 0.617232
Target:  5'- cUCUCCcUCCUCguugCCCGCCcCCCCc-- -3'
miRNA:   3'- uAGAGGuAGGAG----GGGUGGaGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 28333 0.73 0.307602
Target:  5'- cUCUCCcucCCUCCCUcCCUCCCCcGUc -3'
miRNA:   3'- uAGAGGua-GGAGGGGuGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 33221 0.7 0.443479
Target:  5'- cUCUCCcucccCCUCCCUccucuCCUCCCC-GCg -3'
miRNA:   3'- uAGAGGua---GGAGGGGu----GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 39572 0.66 0.697609
Target:  5'- --gUCUGUCCcCCUCucCCUCCCCaGCg -3'
miRNA:   3'- uagAGGUAGGaGGGGu-GGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 45910 0.66 0.656574
Target:  5'- cUCgCCGUCgUCCUCGCCcucgccgUCCCCgccGCg -3'
miRNA:   3'- uAGaGGUAGgAGGGGUGG-------AGGGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.