miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 3' -60.2 NC_005261.1 + 25928 0.67 0.627321
Target:  5'- uUCUUUggCCcugCCCCGCCUCCCgUacGCa -3'
miRNA:   3'- uAGAGGuaGGa--GGGGUGGAGGGgA--CG- -5'
23851 3' -60.2 NC_005261.1 + 26382 0.67 0.627321
Target:  5'- cUCUCC-UCCUCCCC-CUUUUCCguucucGCg -3'
miRNA:   3'- uAGAGGuAGGAGGGGuGGAGGGGa-----CG- -5'
23851 3' -60.2 NC_005261.1 + 6989 0.67 0.637414
Target:  5'- cUCUCUuUCCacuuUCCCCACCcCCCCc-- -3'
miRNA:   3'- uAGAGGuAGG----AGGGGUGGaGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 11150 0.67 0.637414
Target:  5'- cUCUCCc-CCUCCCCuccccguaucucGCCgcggCCCCgGCc -3'
miRNA:   3'- uAGAGGuaGGAGGGG------------UGGa---GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 578 0.67 0.647504
Target:  5'- -aCUaCGcUCCUCCCC-CCUCCCCcucUGUu -3'
miRNA:   3'- uaGAgGU-AGGAGGGGuGGAGGGG---ACG- -5'
23851 3' -60.2 NC_005261.1 + 118527 0.67 0.637414
Target:  5'- ----gCGcCCUgCCCCGCCgaCCCCUGCg -3'
miRNA:   3'- uagagGUaGGA-GGGGUGGa-GGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 778 0.68 0.587057
Target:  5'- --nUCC--CCUCCCCGCCcccCCCCcGCg -3'
miRNA:   3'- uagAGGuaGGAGGGGUGGa--GGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 26581 0.68 0.547296
Target:  5'- -cCUCC-UCCUCCuCCuuCUCCUCUGg -3'
miRNA:   3'- uaGAGGuAGGAGG-GGugGAGGGGACg -5'
23851 3' -60.2 NC_005261.1 + 115884 0.68 0.567088
Target:  5'- aAUCUCCcucgccgccUCCUCCCCGCCgUCgUCaGCg -3'
miRNA:   3'- -UAGAGGu--------AGGAGGGGUGG-AGgGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 16325 0.68 0.557167
Target:  5'- -cCUCCc-CCUCgCCGCCggUCUCCUGCc -3'
miRNA:   3'- uaGAGGuaGGAGgGGUGG--AGGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 26412 0.68 0.557167
Target:  5'- cUCUCUcUCC-CCCCuucUCUCCCuCUGCc -3'
miRNA:   3'- uAGAGGuAGGaGGGGu--GGAGGG-GACG- -5'
23851 3' -60.2 NC_005261.1 + 6538 0.68 0.557167
Target:  5'- -gCUCCccuuUCCUuCCCCACUUaccgcCCCUUGCc -3'
miRNA:   3'- uaGAGGu---AGGA-GGGGUGGA-----GGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 22275 0.68 0.537481
Target:  5'- uUUUCCcUCUUCCgCCGCCcCCCCcGCc -3'
miRNA:   3'- uAGAGGuAGGAGG-GGUGGaGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 102642 0.68 0.587057
Target:  5'- -gCUUCGUCCgcggCCCgcagCACCUCCUCcGCg -3'
miRNA:   3'- uaGAGGUAGGa---GGG----GUGGAGGGGaCG- -5'
23851 3' -60.2 NC_005261.1 + 3199 0.69 0.480054
Target:  5'- -cCUCCcucUCCUCCuCCuCCUCCCCcucGCu -3'
miRNA:   3'- uaGAGGu--AGGAGG-GGuGGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 22369 0.69 0.498887
Target:  5'- cGUCUUC-UCCUCCCUGCCcucccUCCCCa-- -3'
miRNA:   3'- -UAGAGGuAGGAGGGGUGG-----AGGGGacg -5'
23851 3' -60.2 NC_005261.1 + 26539 0.69 0.508426
Target:  5'- -cCUCCcccCUUCUCCGCCUCCCugacuCUGCc -3'
miRNA:   3'- uaGAGGua-GGAGGGGUGGAGGG-----GACG- -5'
23851 3' -60.2 NC_005261.1 + 7930 0.69 0.508426
Target:  5'- -gCUCCAUCCUgCUCGCCg-CCUUGUc -3'
miRNA:   3'- uaGAGGUAGGAgGGGUGGagGGGACG- -5'
23851 3' -60.2 NC_005261.1 + 10718 0.69 0.498887
Target:  5'- -cCUCCGggccccccucuUCCUCCgCCGCCUCCUCccgGUc -3'
miRNA:   3'- uaGAGGU-----------AGGAGG-GGUGGAGGGGa--CG- -5'
23851 3' -60.2 NC_005261.1 + 2871 0.69 0.498887
Target:  5'- uUCUUCcUCCUCCuCCuCCUCCUCgGCc -3'
miRNA:   3'- uAGAGGuAGGAGG-GGuGGAGGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.