Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23851 | 5' | -58.2 | NC_005261.1 | + | 138199 | 0.82 | 0.148392 |
Target: 5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3' miRNA: 3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 138111 | 0.68 | 0.730942 |
Target: 5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3' miRNA: 3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 138044 | 0.7 | 0.604295 |
Target: 5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3' miRNA: 3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 136572 | 0.71 | 0.594412 |
Target: 5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3' miRNA: 3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 135255 | 0.76 | 0.338213 |
Target: 5'- cGGGCGcGCGGAUGGACAucauGCGGCCu -3' miRNA: 3'- -CCUGCcUGCCUGCCUGUcu--CGCUGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 134971 | 0.71 | 0.594412 |
Target: 5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3' miRNA: 3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 134943 | 0.69 | 0.703013 |
Target: 5'- aGGACGaGCcGAUGGGCgAGGGCG-CCGg -3' miRNA: 3'- -CCUGCcUGcCUGCCUG-UCUCGCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 132899 | 0.69 | 0.663755 |
Target: 5'- cGGGCGccGCGGGCGGcGCcGAGCGGCgGc -3' miRNA: 3'- -CCUGCc-UGCCUGCC-UGuCUCGCUGgC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 132639 | 0.71 | 0.594412 |
Target: 5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3' miRNA: 3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 131643 | 0.67 | 0.802137 |
Target: 5'- aGGACcGACGGGCcccccGGGCgcaccgucugcgagGGuGCGACCGc -3' miRNA: 3'- -CCUGcCUGCCUG-----CCUG--------------UCuCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 129740 | 0.68 | 0.760044 |
Target: 5'- aGGGCGG-CGGGgccCGGccuuCAGcaccGGCGACCGc -3' miRNA: 3'- -CCUGCCuGCCU---GCCu---GUC----UCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 129649 | 0.67 | 0.787237 |
Target: 5'- cGGugGcGGCGG-CGGcgGCAGGGgcggGACCGg -3' miRNA: 3'- -CCugC-CUGCCuGCC--UGUCUCg---CUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 129561 | 0.67 | 0.821623 |
Target: 5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3' miRNA: 3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 128507 | 0.66 | 0.837875 |
Target: 5'- cGACGcGGCGG-CGGagGCAGccuccuGGCGGCUGg -3' miRNA: 3'- cCUGC-CUGCCuGCC--UGUC------UCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 128101 | 0.7 | 0.653862 |
Target: 5'- cGGGCGaGCGGcGCGGcGCGGGGUcgGGCCGa -3' miRNA: 3'- -CCUGCcUGCC-UGCC-UGUCUCG--CUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 128070 | 0.85 | 0.08714 |
Target: 5'- uGGCGGGCGGGCGGGC-GAGCGAgCGg -3' miRNA: 3'- cCUGCCUGCCUGCCUGuCUCGCUgGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 127815 | 0.67 | 0.803863 |
Target: 5'- cGGCGGgccgcucgcgcucGCGGccgcgagcaGCGGACGGGGCGGUCGc -3' miRNA: 3'- cCUGCC-------------UGCC---------UGCCUGUCUCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 127657 | 0.69 | 0.692284 |
Target: 5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3' miRNA: 3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 127625 | 0.71 | 0.545511 |
Target: 5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3' miRNA: 3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 127313 | 0.71 | 0.562017 |
Target: 5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3' miRNA: 3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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