miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 373 0.7 0.604295
Target:  5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3'
miRNA:   3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5'
23851 5' -58.2 NC_005261.1 + 440 0.68 0.730942
Target:  5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3'
miRNA:   3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 528 0.82 0.148392
Target:  5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3'
miRNA:   3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5'
23851 5' -58.2 NC_005261.1 + 1006 0.67 0.813251
Target:  5'- gGGGCGGG-GGGCGG--GGGGCGGgUGg -3'
miRNA:   3'- -CCUGCCUgCCUGCCugUCUCGCUgGC- -5'
23851 5' -58.2 NC_005261.1 + 1041 0.73 0.461322
Target:  5'- aGGGCGG-CGGGCGG-CGGcguuAGCGGCgCGg -3'
miRNA:   3'- -CCUGCCuGCCUGCCuGUC----UCGCUG-GC- -5'
23851 5' -58.2 NC_005261.1 + 2627 0.79 0.221184
Target:  5'- cGGGCGGcauggggcccagcacGCGGGCGGGCAGcGGCGGCUc -3'
miRNA:   3'- -CCUGCC---------------UGCCUGCCUGUC-UCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 2801 0.7 0.634032
Target:  5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3'
miRNA:   3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 4397 0.67 0.778293
Target:  5'- cGGcCGGGCGG-CGG-CGGcGCGcuGCCGg -3'
miRNA:   3'- -CCuGCCUGCCuGCCuGUCuCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 4572 0.68 0.769226
Target:  5'- -cGCGGGCGGGucCGG-CGGGGCGcCCc -3'
miRNA:   3'- ccUGCCUGCCU--GCCuGUCUCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 7991 0.66 0.837875
Target:  5'- cGGugGGAgaGGGgGGAgAGGGgGGCUu -3'
miRNA:   3'- -CCugCCUg-CCUgCCUgUCUCgCUGGc -5'
23851 5' -58.2 NC_005261.1 + 9644 0.66 0.852665
Target:  5'- uGGGUGGGCGGGgcccacuCGGGCGG-GCGcCCa -3'
miRNA:   3'- -CCUGCCUGCCU-------GCCUGUCuCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 11097 0.69 0.703013
Target:  5'- gGGGCgGGACGcGACgGGACgAGAuGCG-CCGg -3'
miRNA:   3'- -CCUG-CCUGC-CUG-CCUG-UCU-CGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 11423 0.79 0.229721
Target:  5'- aGGAgGaGGCGGGCGGGgGGGGCGGCgGa -3'
miRNA:   3'- -CCUgC-CUGCCUGCCUgUCUCGCUGgC- -5'
23851 5' -58.2 NC_005261.1 + 11467 0.76 0.316637
Target:  5'- cGGAgCGGgcGCGGAgGGGCGGGGCGgggguGCCGg -3'
miRNA:   3'- -CCU-GCC--UGCCUgCCUGUCUCGC-----UGGC- -5'
23851 5' -58.2 NC_005261.1 + 12426 0.67 0.778293
Target:  5'- gGGGCGG-CGGAgGGcuuGCGGcGuCGGCCGc -3'
miRNA:   3'- -CCUGCCuGCCUgCC---UGUCuC-GCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 13092 0.72 0.535874
Target:  5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3'
miRNA:   3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 13396 0.66 0.845741
Target:  5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3'
miRNA:   3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5'
23851 5' -58.2 NC_005261.1 + 13684 0.73 0.461322
Target:  5'- gGGGCGcGCGGGCgugGGGCGGGGCgGGCUGg -3'
miRNA:   3'- -CCUGCcUGCCUG---CCUGUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 13715 0.67 0.778293
Target:  5'- gGGGCGGGggugggGGugGGGguGGGCuuGGCCGc -3'
miRNA:   3'- -CCUGCCUg-----CCugCCUguCUCG--CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 15481 0.68 0.760967
Target:  5'- cGGCGGACacgcgccgcucgcuGCGGGCGGGGCGugUGu -3'
miRNA:   3'- cCUGCCUGcc------------UGCCUGUCUCGCugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.