miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 15716 0.69 0.712707
Target:  5'- uGGGUGGACGGcgaACGcGACGGGGCcguccgcgcgcaGGCCGa -3'
miRNA:   3'- -CCUGCCUGCC---UGC-CUGUCUCG------------CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 15958 0.68 0.731894
Target:  5'- gGGGCGaguGGCGGGCgGGGgAGGGCccgGGCCGc -3'
miRNA:   3'- -CCUGC---CUGCCUG-CCUgUCUCG---CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 16181 0.68 0.74137
Target:  5'- cGGGCGuGGCGGG-GGugGGcGGgGGCCGc -3'
miRNA:   3'- -CCUGC-CUGCCUgCCugUC-UCgCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 16290 0.67 0.778293
Target:  5'- cGGGgGGGCGccguCGGGCccAGcGGCGGCCGg -3'
miRNA:   3'- -CCUgCCUGCcu--GCCUG--UC-UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 17750 0.7 0.604295
Target:  5'- cGGGCGGACuucugGGGCGGugGuGGCGucACCa -3'
miRNA:   3'- -CCUGCCUG-----CCUGCCugUcUCGC--UGGc -5'
23851 5' -58.2 NC_005261.1 + 18664 0.66 0.86092
Target:  5'- cGGGCGGGCcccaGCGGGCGaAGgGGCCc -3'
miRNA:   3'- -CCUGCCUGcc--UGCCUGUcUCgCUGGc -5'
23851 5' -58.2 NC_005261.1 + 19956 0.78 0.246478
Target:  5'- gGGugGGGCGGccuCGGcuGCGGcAGCGACCGc -3'
miRNA:   3'- -CCugCCUGCCu--GCC--UGUC-UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 20553 0.69 0.683464
Target:  5'- uGGACGuGGCGG-CGGGCuGcgcAGCGgcGCCGg -3'
miRNA:   3'- -CCUGC-CUGCCuGCCUGuC---UCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 22100 0.72 0.526297
Target:  5'- gGGGCGGgaggGCGGuguGCGGAgAGuGCGugCGg -3'
miRNA:   3'- -CCUGCC----UGCC---UGCCUgUCuCGCugGC- -5'
23851 5' -58.2 NC_005261.1 + 22443 1.11 0.001552
Target:  5'- cGGACGGACGGACGGACAGAGCGACCGa -3'
miRNA:   3'- -CCUGCCUGCCUGCCUGUCUCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23546 0.72 0.497975
Target:  5'- aGGCGGcaggagccgucGCaGGugGGGCAGGGCuGGCCGu -3'
miRNA:   3'- cCUGCC-----------UG-CCugCCUGUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23627 0.68 0.74137
Target:  5'- gGGGCGcGGCGGG-GGuCGG-GCGGCUGg -3'
miRNA:   3'- -CCUGC-CUGCCUgCCuGUCuCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23772 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23829 0.7 0.623119
Target:  5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3'
miRNA:   3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23871 0.67 0.820793
Target:  5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3'
miRNA:   3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5'
23851 5' -58.2 NC_005261.1 + 23984 0.66 0.837875
Target:  5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3'
miRNA:   3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 26875 0.71 0.555203
Target:  5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3'
miRNA:   3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5'
23851 5' -58.2 NC_005261.1 + 27252 0.78 0.240782
Target:  5'- gGGugGGGCGGgguguGCGGGCAGccCGGCCGg -3'
miRNA:   3'- -CCugCCUGCC-----UGCCUGUCucGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 27334 0.69 0.673625
Target:  5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3'
miRNA:   3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 27456 0.68 0.750756
Target:  5'- cGGCGGGCcgccccgcgGGGCGGGCAGgcccuccccgGGCGcACCu -3'
miRNA:   3'- cCUGCCUG---------CCUGCCUGUC----------UCGC-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.