miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 87889 0.74 0.426143
Target:  5'- aGGcGCGGAgaGGGCGGGCcGGGCGuACCGu -3'
miRNA:   3'- -CC-UGCCUg-CCUGCCUGuCUCGC-UGGC- -5'
23851 5' -58.2 NC_005261.1 + 31574 0.74 0.426143
Target:  5'- uGGACGGGCGcGcCGGACGuGAGCGcGCuCGg -3'
miRNA:   3'- -CCUGCCUGC-CuGCCUGU-CUCGC-UG-GC- -5'
23851 5' -58.2 NC_005261.1 + 110819 0.73 0.443537
Target:  5'- gGGGCGGACGGggccGCGGAC-GAGUuuCCGc -3'
miRNA:   3'- -CCUGCCUGCC----UGCCUGuCUCGcuGGC- -5'
23851 5' -58.2 NC_005261.1 + 35272 0.73 0.451493
Target:  5'- uGGugGuGACGGGCGGugAgggaggacgagaaGAGCG-CCGg -3'
miRNA:   3'- -CCugC-CUGCCUGCCugU-------------CUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 71058 0.73 0.461322
Target:  5'- cGugGGccagccgccGCGcGGCGGGCGGGGCGuCCGg -3'
miRNA:   3'- cCugCC---------UGC-CUGCCUGUCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 13684 0.73 0.461322
Target:  5'- gGGGCGcGCGGGCgugGGGCGGGGCgGGCUGg -3'
miRNA:   3'- -CCUGCcUGCCUG---CCUGUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 1041 0.73 0.461322
Target:  5'- aGGGCGG-CGGGCGG-CGGcguuAGCGGCgCGg -3'
miRNA:   3'- -CCUGCCuGCCUGCCuGUC----UCGCUG-GC- -5'
23851 5' -58.2 NC_005261.1 + 116489 0.73 0.470355
Target:  5'- gGGGCGGGCGcGCGGuauaaAGAGCGccGCCGc -3'
miRNA:   3'- -CCUGCCUGCcUGCCug---UCUCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 44021 0.73 0.479477
Target:  5'- cGGCGcGGCGGGCGGccgccGCGcGGCGGCCGc -3'
miRNA:   3'- cCUGC-CUGCCUGCC-----UGUcUCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 23546 0.72 0.497975
Target:  5'- aGGCGGcaggagccgucGCaGGugGGGCAGGGCuGGCCGu -3'
miRNA:   3'- cCUGCC-----------UG-CCugCCUGUCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 104087 0.72 0.526297
Target:  5'- cGGCGGACaGGGCGG-CGGcgcuccgcGCGACCGc -3'
miRNA:   3'- cCUGCCUG-CCUGCCuGUCu-------CGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 113906 0.72 0.526297
Target:  5'- cGGGCGcGAUGGccgaggcaGCGGGCGcGGCGACCc -3'
miRNA:   3'- -CCUGC-CUGCC--------UGCCUGUcUCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 32925 0.72 0.526297
Target:  5'- gGGGCGG-CGGGCGGGgGGGG-GGCgGg -3'
miRNA:   3'- -CCUGCCuGCCUGCCUgUCUCgCUGgC- -5'
23851 5' -58.2 NC_005261.1 + 22100 0.72 0.526297
Target:  5'- gGGGCGGgaggGCGGuguGCGGAgAGuGCGugCGg -3'
miRNA:   3'- -CCUGCC----UGCC---UGCCUgUCuCGCugGC- -5'
23851 5' -58.2 NC_005261.1 + 13092 0.72 0.535874
Target:  5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3'
miRNA:   3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 127625 0.71 0.545511
Target:  5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3'
miRNA:   3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 26875 0.71 0.555203
Target:  5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3'
miRNA:   3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5'
23851 5' -58.2 NC_005261.1 + 56135 0.71 0.555203
Target:  5'- aGGGCGGGgGGcGCGGGCcgAGGGUGGCgGc -3'
miRNA:   3'- -CCUGCCUgCC-UGCCUG--UCUCGCUGgC- -5'
23851 5' -58.2 NC_005261.1 + 93676 0.71 0.555203
Target:  5'- cGGGCGG-CGGcGCcGGCGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCCuGCC-UGcCUGUCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 127313 0.71 0.562017
Target:  5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3'
miRNA:   3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.