miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 74710 0.66 0.837875
Target:  5'- -cGCGGgcGCGGAacCGGGCcgcGGcAGCGGCCGc -3'
miRNA:   3'- ccUGCC--UGCCU--GCCUG---UC-UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 94870 0.66 0.829834
Target:  5'- -cACGGccCGGGCGGGCGGcccGCGugCa -3'
miRNA:   3'- ccUGCCu-GCCUGCCUGUCu--CGCugGc -5'
23851 5' -58.2 NC_005261.1 + 76444 0.66 0.829834
Target:  5'- uGGCGGACGcgcccGACGGcgACGGcGGCG-CCGg -3'
miRNA:   3'- cCUGCCUGC-----CUGCC--UGUC-UCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 100176 0.66 0.829834
Target:  5'- gGGACGcaacgccguGGCGG-CgGGGCAGcguGGCGGCCa -3'
miRNA:   3'- -CCUGC---------CUGCCuG-CCUGUC---UCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 43779 0.67 0.821623
Target:  5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 60050 0.67 0.821623
Target:  5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3'
miRNA:   3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5'
23851 5' -58.2 NC_005261.1 + 99755 0.67 0.821623
Target:  5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3'
miRNA:   3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5'
23851 5' -58.2 NC_005261.1 + 129561 0.67 0.821623
Target:  5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3'
miRNA:   3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 68731 0.67 0.820793
Target:  5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3'
miRNA:   3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 23871 0.67 0.820793
Target:  5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3'
miRNA:   3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5'
23851 5' -58.2 NC_005261.1 + 27732 0.67 0.813251
Target:  5'- aGGAgCGGAgaCGcGCGGGCAGAGgaGCCGa -3'
miRNA:   3'- -CCU-GCCU--GCcUGCCUGUCUCgcUGGC- -5'
23851 5' -58.2 NC_005261.1 + 50637 0.67 0.813251
Target:  5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 1006 0.67 0.813251
Target:  5'- gGGGCGGG-GGGCGG--GGGGCGGgUGg -3'
miRNA:   3'- -CCUGCCUgCCUGCCugUCUCGCUgGC- -5'
23851 5' -58.2 NC_005261.1 + 58300 0.67 0.804724
Target:  5'- cGGgGGGCGcGgGGAgGGGGCGGCCc -3'
miRNA:   3'- cCUgCCUGCcUgCCUgUCUCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 74668 0.67 0.804724
Target:  5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3'
miRNA:   3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 74414 0.67 0.804724
Target:  5'- cGGccGCGGGCGGGaGGGCcgaggAGAGCGcCCc -3'
miRNA:   3'- -CC--UGCCUGCCUgCCUG-----UCUCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 127815 0.67 0.803863
Target:  5'- cGGCGGgccgcucgcgcucGCGGccgcgagcaGCGGACGGGGCGGUCGc -3'
miRNA:   3'- cCUGCC-------------UGCC---------UGCCUGUCUCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 131643 0.67 0.802137
Target:  5'- aGGACcGACGGGCcccccGGGCgcaccgucugcgagGGuGCGACCGc -3'
miRNA:   3'- -CCUGcCUGCCUG-----CCUG--------------UCuCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 75477 0.67 0.79605
Target:  5'- cGGGCGG-CGGcGCGGGCcgcuacgagcgcGGGGCG-CUGg -3'
miRNA:   3'- -CCUGCCuGCC-UGCCUG------------UCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 77223 0.67 0.79605
Target:  5'- uGGcCGGGgGGGaGGAgcCAGAGCGcaGCCGg -3'
miRNA:   3'- -CCuGCCUgCCUgCCU--GUCUCGC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.