miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23851 5' -58.2 NC_005261.1 + 89270 0.67 0.79605
Target:  5'- cGGGC-GACGGGCuGGCGuucccGGCGGCCGc -3'
miRNA:   3'- -CCUGcCUGCCUGcCUGUc----UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 75477 0.67 0.79605
Target:  5'- cGGGCGG-CGGcGCGGGCcgcuacgagcgcGGGGCG-CUGg -3'
miRNA:   3'- -CCUGCCuGCC-UGCCUG------------UCUCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 126983 0.67 0.79605
Target:  5'- -cGCGGG-GGACGGACcgucaGGGGcCGACCc -3'
miRNA:   3'- ccUGCCUgCCUGCCUG-----UCUC-GCUGGc -5'
23851 5' -58.2 NC_005261.1 + 97959 0.67 0.79605
Target:  5'- cGAgGGA-GGugGcGGCGGAGCGGugcCCGg -3'
miRNA:   3'- cCUgCCUgCCugC-CUGUCUCGCU---GGC- -5'
23851 5' -58.2 NC_005261.1 + 38277 0.67 0.790779
Target:  5'- gGGGCGGcuggugcacGCGGugcuggcccgccugaGCGcGCAGGGCGGCCc -3'
miRNA:   3'- -CCUGCC---------UGCC---------------UGCcUGUCUCGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 77680 0.67 0.787237
Target:  5'- gGGcGCGGACGGGcCGGGCuacGA-CGGCCc -3'
miRNA:   3'- -CC-UGCCUGCCU-GCCUGu--CUcGCUGGc -5'
23851 5' -58.2 NC_005261.1 + 98042 0.67 0.787237
Target:  5'- cGGuACuGGCGGccGCGGGCGGcGgGACCGc -3'
miRNA:   3'- -CC-UGcCUGCC--UGCCUGUCuCgCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 64113 0.67 0.787237
Target:  5'- cGGcACGGGCGGcACGuGCcGcGCGGCCGc -3'
miRNA:   3'- -CC-UGCCUGCC-UGCcUGuCuCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 129649 0.67 0.787237
Target:  5'- cGGugGcGGCGG-CGGcgGCAGGGgcggGACCGg -3'
miRNA:   3'- -CCugC-CUGCCuGCC--UGUCUCg---CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 4397 0.67 0.778293
Target:  5'- cGGcCGGGCGG-CGG-CGGcGCGcuGCCGg -3'
miRNA:   3'- -CCuGCCUGCCuGCCuGUCuCGC--UGGC- -5'
23851 5' -58.2 NC_005261.1 + 12426 0.67 0.778293
Target:  5'- gGGGCGG-CGGAgGGcuuGCGGcGuCGGCCGc -3'
miRNA:   3'- -CCUGCCuGCCUgCC---UGUCuC-GCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 13715 0.67 0.778293
Target:  5'- gGGGCGGGggugggGGugGGGguGGGCuuGGCCGc -3'
miRNA:   3'- -CCUGCCUg-----CCugCCUguCUCG--CUGGC- -5'
23851 5' -58.2 NC_005261.1 + 16290 0.67 0.778293
Target:  5'- cGGGgGGGCGccguCGGGCccAGcGGCGGCCGg -3'
miRNA:   3'- -CCUgCCUGCcu--GCCUG--UC-UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 98565 0.68 0.769226
Target:  5'- cGGCGGGCGGccguccuccGCGGGCucGGGCGAgUa -3'
miRNA:   3'- cCUGCCUGCC---------UGCCUGu-CUCGCUgGc -5'
23851 5' -58.2 NC_005261.1 + 98195 0.68 0.769226
Target:  5'- ---gGGGCGcGGCGGGCAGcgGGCG-CCGc -3'
miRNA:   3'- ccugCCUGC-CUGCCUGUC--UCGCuGGC- -5'
23851 5' -58.2 NC_005261.1 + 4572 0.68 0.769226
Target:  5'- -cGCGGGCGGGucCGG-CGGGGCGcCCc -3'
miRNA:   3'- ccUGCCUGCCU--GCCuGUCUCGCuGGc -5'
23851 5' -58.2 NC_005261.1 + 15481 0.68 0.760967
Target:  5'- cGGCGGACacgcgccgcucgcuGCGGGCGGGGCGugUGu -3'
miRNA:   3'- cCUGCCUGcc------------UGCCUGUCUCGCugGC- -5'
23851 5' -58.2 NC_005261.1 + 129740 0.68 0.760044
Target:  5'- aGGGCGG-CGGGgccCGGccuuCAGcaccGGCGACCGc -3'
miRNA:   3'- -CCUGCCuGCCU---GCCu---GUC----UCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 39783 0.68 0.760044
Target:  5'- aGGACGucgcCGGG-GGGCGGcGCGGCCGc -3'
miRNA:   3'- -CCUGCcu--GCCUgCCUGUCuCGCUGGC- -5'
23851 5' -58.2 NC_005261.1 + 79707 0.68 0.760044
Target:  5'- aGACcGGCGGGCGGcuguaGCAGAcGCcGCCGg -3'
miRNA:   3'- cCUGcCUGCCUGCC-----UGUCU-CGcUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.