Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23851 | 5' | -58.2 | NC_005261.1 | + | 85936 | 0.66 | 0.86092 |
Target: 5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3' miRNA: 3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 109884 | 0.66 | 0.837875 |
Target: 5'- -cGCGGGCGGGCGcccCGGGGCuacagccccugGACCGc -3' miRNA: 3'- ccUGCCUGCCUGCcu-GUCUCG-----------CUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 59724 | 0.66 | 0.853425 |
Target: 5'- cGcCGGGCGGcaGCGG-CGGcgcGCGGCCGc -3' miRNA: 3'- cCuGCCUGCC--UGCCuGUCu--CGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 13396 | 0.66 | 0.845741 |
Target: 5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3' miRNA: 3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 77680 | 0.67 | 0.787237 |
Target: 5'- gGGcGCGGACGGGcCGGGCuacGA-CGGCCc -3' miRNA: 3'- -CC-UGCCUGCCU-GCCUGu--CUcGCUGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 68731 | 0.67 | 0.820793 |
Target: 5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3' miRNA: 3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 129561 | 0.67 | 0.821623 |
Target: 5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3' miRNA: 3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 60050 | 0.67 | 0.821623 |
Target: 5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3' miRNA: 3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 99755 | 0.67 | 0.821623 |
Target: 5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3' miRNA: 3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 89270 | 0.67 | 0.79605 |
Target: 5'- cGGGC-GACGGGCuGGCGuucccGGCGGCCGc -3' miRNA: 3'- -CCUGcCUGCCUGcCUGUc----UCGCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 43779 | 0.67 | 0.821623 |
Target: 5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3' miRNA: 3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 50637 | 0.67 | 0.813251 |
Target: 5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3' miRNA: 3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 23871 | 0.67 | 0.820793 |
Target: 5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3' miRNA: 3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 74414 | 0.67 | 0.804724 |
Target: 5'- cGGccGCGGGCGGGaGGGCcgaggAGAGCGcCCc -3' miRNA: 3'- -CC--UGCCUGCCUgCCUG-----UCUCGCuGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 74668 | 0.67 | 0.804724 |
Target: 5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3' miRNA: 3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 98042 | 0.67 | 0.787237 |
Target: 5'- cGGuACuGGCGGccGCGGGCGGcGgGACCGc -3' miRNA: 3'- -CC-UGcCUGCC--UGCCUGUCuCgCUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 30679 | 0.67 | 0.79605 |
Target: 5'- gGGACGGggACGGGgacggGGACGGGGaGGCCc -3' miRNA: 3'- -CCUGCC--UGCCUg----CCUGUCUCgCUGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 38277 | 0.67 | 0.790779 |
Target: 5'- gGGGCGGcuggugcacGCGGugcuggcccgccugaGCGcGCAGGGCGGCCc -3' miRNA: 3'- -CCUGCC---------UGCC---------------UGCcUGUCUCGCUGGc -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 129649 | 0.67 | 0.787237 |
Target: 5'- cGGugGcGGCGG-CGGcgGCAGGGgcggGACCGg -3' miRNA: 3'- -CCugC-CUGCCuGCC--UGUCUCg---CUGGC- -5' |
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23851 | 5' | -58.2 | NC_005261.1 | + | 77223 | 0.67 | 0.79605 |
Target: 5'- uGGcCGGGgGGGaGGAgcCAGAGCGcaGCCGg -3' miRNA: 3'- -CCuGCCUgCCUgCCU--GUCUCGC--UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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