miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 3' -52.6 NC_005261.1 + 74907 0.66 0.979073
Target:  5'- cCCGcgcUGGCCGcGCGG-GGGAGGgCGa -3'
miRNA:   3'- -GGCau-ACCGGCuCGUCuUUCUUCgGC- -5'
23853 3' -52.6 NC_005261.1 + 125812 0.66 0.979073
Target:  5'- gCCGg--GGCCGccGC-GAgcGggGCCGg -3'
miRNA:   3'- -GGCauaCCGGCu-CGuCUuuCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 15649 0.66 0.979073
Target:  5'- gCCGcccGGCCGGGagcuggugcucCAGGAAGAucAGCCu -3'
miRNA:   3'- -GGCauaCCGGCUC-----------GUCUUUCU--UCGGc -5'
23853 3' -52.6 NC_005261.1 + 97569 0.66 0.979073
Target:  5'- cCCGggguuggcucgGUGGCgCGGGCGGAGcgggcGGAGCgGg -3'
miRNA:   3'- -GGCa----------UACCG-GCUCGUCUUu----CUUCGgC- -5'
23853 3' -52.6 NC_005261.1 + 117774 0.66 0.979073
Target:  5'- uCCGgaucgGGgCGGGgAGGAGGGAGgCGa -3'
miRNA:   3'- -GGCaua--CCgGCUCgUCUUUCUUCgGC- -5'
23853 3' -52.6 NC_005261.1 + 83857 0.66 0.979073
Target:  5'- cCCGcugGGCUGGGCcGGGccGGAcGCCGg -3'
miRNA:   3'- -GGCauaCCGGCUCGuCUU--UCUuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 89770 0.66 0.97667
Target:  5'- gCCGU--GGCCGAGgAGGcccugcGGGAGCgGa -3'
miRNA:   3'- -GGCAuaCCGGCUCgUCUu-----UCUUCGgC- -5'
23853 3' -52.6 NC_005261.1 + 81344 0.66 0.97667
Target:  5'- gCCGUc-GGCgGGGCGGGggcuugcggGGGgcGCCGg -3'
miRNA:   3'- -GGCAuaCCGgCUCGUCU---------UUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 46107 0.66 0.97667
Target:  5'- gCCGgg-GGCCGugguccgcguccAGCAGGucgccgcccGAGAAcGCCGa -3'
miRNA:   3'- -GGCauaCCGGC------------UCGUCU---------UUCUU-CGGC- -5'
23853 3' -52.6 NC_005261.1 + 74855 0.66 0.97667
Target:  5'- gCGgcgcGCCGGGCGGA-GGAGGCgGa -3'
miRNA:   3'- gGCauacCGGCUCGUCUuUCUUCGgC- -5'
23853 3' -52.6 NC_005261.1 + 75824 0.66 0.97667
Target:  5'- cCCGgcgcGGCCGcGCccGGGGAGggGCgCGc -3'
miRNA:   3'- -GGCaua-CCGGCuCG--UCUUUCuuCG-GC- -5'
23853 3' -52.6 NC_005261.1 + 114354 0.66 0.97667
Target:  5'- gCGcGUGGCCGcGGCcGAGucGGuGGCCGa -3'
miRNA:   3'- gGCaUACCGGC-UCGuCUU--UCuUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 87877 0.66 0.976419
Target:  5'- ---gGUGGCgGAgagaggcGCGGAGAGGgcgGGCCGg -3'
miRNA:   3'- ggcaUACCGgCU-------CGUCUUUCU---UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 48019 0.66 0.974072
Target:  5'- cCCGcc-GGCaGAGCAGGgcGAGGAGCaCGc -3'
miRNA:   3'- -GGCauaCCGgCUCGUCU--UUCUUCG-GC- -5'
23853 3' -52.6 NC_005261.1 + 68733 0.66 0.971269
Target:  5'- gCGg--GcGCCG-GCGGGAAGAAGCg- -3'
miRNA:   3'- gGCauaC-CGGCuCGUCUUUCUUCGgc -5'
23853 3' -52.6 NC_005261.1 + 131223 0.66 0.968255
Target:  5'- gCGUacGUGGCCGcGCGcAucGAGGCUGa -3'
miRNA:   3'- gGCA--UACCGGCuCGUcUuuCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 135021 0.66 0.968255
Target:  5'- cCCGcacgcGGCCGcGGCGGc--GAGGCCGa -3'
miRNA:   3'- -GGCaua--CCGGC-UCGUCuuuCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 71620 0.66 0.968255
Target:  5'- cCCGggcgcgGGcCCGGGCGGcgGGAAaacGCCGc -3'
miRNA:   3'- -GGCaua---CC-GGCUCGUCuuUCUU---CGGC- -5'
23853 3' -52.6 NC_005261.1 + 74343 0.66 0.968255
Target:  5'- aCCGca-GGCgCGgcGGCGGAAGGGgcGGCCGc -3'
miRNA:   3'- -GGCauaCCG-GC--UCGUCUUUCU--UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 111558 0.66 0.968255
Target:  5'- aCCGccugcccGGCCGAcgcgGCAGAGcagcucGAGGCCGa -3'
miRNA:   3'- -GGCaua----CCGGCU----CGUCUUu-----CUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.