miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 3' -52.6 NC_005261.1 + 136057 0.67 0.965022
Target:  5'- aCCGgc-GGgCGGGCAGGGAGAacaaAGgCGa -3'
miRNA:   3'- -GGCauaCCgGCUCGUCUUUCU----UCgGC- -5'
23853 3' -52.6 NC_005261.1 + 135196 0.7 0.849828
Target:  5'- gCGgagcAUGGCCGAggcggcGCAGAGGGccacGGCCGa -3'
miRNA:   3'- gGCa---UACCGGCU------CGUCUUUCu---UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 135021 0.66 0.968255
Target:  5'- cCCGcacgcGGCCGcGGCGGc--GAGGCCGa -3'
miRNA:   3'- -GGCaua--CCGGC-UCGUCuuuCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 133216 0.68 0.930699
Target:  5'- gCCGUcgaGGCCGAGCu----GggGCCc -3'
miRNA:   3'- -GGCAua-CCGGCUCGucuuuCuuCGGc -5'
23853 3' -52.6 NC_005261.1 + 131223 0.66 0.968255
Target:  5'- gCGUacGUGGCCGcGCGcAucGAGGCUGa -3'
miRNA:   3'- gGCA--UACCGGCuCGUcUuuCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 130168 0.68 0.940745
Target:  5'- aCCGUcagcgGcGCCG-GCAGcAGGGAGCUGa -3'
miRNA:   3'- -GGCAua---C-CGGCuCGUCuUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 129698 0.67 0.95788
Target:  5'- gCCGg--GGCCgGGGCcGGAGGcAGGCCc -3'
miRNA:   3'- -GGCauaCCGG-CUCGuCUUUC-UUCGGc -5'
23853 3' -52.6 NC_005261.1 + 128888 0.67 0.95788
Target:  5'- gCGgg-GGCCGGGUGGGAGGcGGgCGu -3'
miRNA:   3'- gGCauaCCGGCUCGUCUUUCuUCgGC- -5'
23853 3' -52.6 NC_005261.1 + 128122 0.77 0.493091
Target:  5'- -gGUcgGGCCGAguGCGGAGAGAGGCg- -3'
miRNA:   3'- ggCAuaCCGGCU--CGUCUUUCUUCGgc -5'
23853 3' -52.6 NC_005261.1 + 127332 0.68 0.940745
Target:  5'- cCCGcgggGGCCgGAGCGGcgGGgcGCUGg -3'
miRNA:   3'- -GGCaua-CCGG-CUCGUCuuUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 127021 0.7 0.85784
Target:  5'- gCGgc-GGcCCGAGCAGGGAGucGUCGa -3'
miRNA:   3'- gGCauaCC-GGCUCGUCUUUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 126691 0.67 0.949798
Target:  5'- uCCGa--GGCCGGcgguGCGGGAAGcGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCU----CGUCUUUCuUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 125812 0.66 0.979073
Target:  5'- gCCGg--GGCCGccGC-GAgcGggGCCGg -3'
miRNA:   3'- -GGCauaCCGGCu-CGuCUuuCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 125367 0.69 0.894564
Target:  5'- ------cGCCGGGCAGAGGGgcGCUGg -3'
miRNA:   3'- ggcauacCGGCUCGUCUUUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121791 0.75 0.605312
Target:  5'- gCCGgcgGGCUGGGCAGggGGcgcguGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCUCGUCuuUCu----UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121711 0.73 0.739901
Target:  5'- gCGUAgacGCCGAcgGCgGGGGAGAAGCCGa -3'
miRNA:   3'- gGCAUac-CGGCU--CG-UCUUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121557 0.67 0.949798
Target:  5'- gCCGUccucGGCgaaGGGCGGGGAcGAGGCCu -3'
miRNA:   3'- -GGCAua--CCGg--CUCGUCUUU-CUUCGGc -5'
23853 3' -52.6 NC_005261.1 + 121497 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121434 0.67 0.965022
Target:  5'- aCGgggcGGCgGGGCGGGcauGggGCCGu -3'
miRNA:   3'- gGCaua-CCGgCUCGUCUuu-CuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121192 0.68 0.930699
Target:  5'- gCCGg--GGCCGGGCcc---GggGCCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGucuuuCuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.