miRNA display CGI


Results 41 - 60 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 102332 0.66 0.651302
Target:  5'- gCGCAGC-CGCGCcaGcUCGGCCGcgucgaaGGCg -3'
miRNA:   3'- -GCGUCGcGCGCGcaC-AGCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 73383 0.66 0.628554
Target:  5'- gCGCGGCcacGCGCGCGUG-CagcaccagguacggGGCCGcGAa -3'
miRNA:   3'- -GCGUCG---CGCGCGCACaG--------------CCGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 64298 0.66 0.661174
Target:  5'- -cCAGCGUGCGCaUGUuucgcgucgCGGCCGUaGCc -3'
miRNA:   3'- gcGUCGCGCGCGcACA---------GCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 34037 0.66 0.611745
Target:  5'- gCGCGGCGCGCGCGcUGcCcuGCC-UGcACg -3'
miRNA:   3'- -GCGUCGCGCGCGC-ACaGc-CGGcAC-UG- -5'
23853 5' -61.7 NC_005261.1 + 68674 0.66 0.611745
Target:  5'- cCGcCGGCGUccGcCGCGUGggGGCCGgcgcgGACg -3'
miRNA:   3'- -GC-GUCGCG--C-GCGCACagCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 70170 0.66 0.611745
Target:  5'- aGCAGCaGgGCGCGggagCGGCCGcuguggaGGCg -3'
miRNA:   3'- gCGUCG-CgCGCGCaca-GCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 92597 0.66 0.651302
Target:  5'- gCGCAGcCGCucgcgGCGCGUGcCGGggccCCG-GGCg -3'
miRNA:   3'- -GCGUC-GCG-----CGCGCACaGCC----GGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 47592 0.66 0.608782
Target:  5'- cCGC-GCGCGCGCGagggagccgcccccUGcgggggCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCGCGCGC--------------ACa-----GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 30180 0.66 0.610757
Target:  5'- gCGCuGCGCGCcgaggcggccgccGCGcUGgaggCGGCCGcgcUGGCg -3'
miRNA:   3'- -GCGuCGCGCG-------------CGC-ACa---GCCGGC---ACUG- -5'
23853 5' -61.7 NC_005261.1 + 103891 0.66 0.665117
Target:  5'- gGCGGCGCGCcaagccgggccacccGCGccgccagGUCGGgCGcGGCg -3'
miRNA:   3'- gCGUCGCGCG---------------CGCa------CAGCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 89417 0.66 0.651302
Target:  5'- -uCGGCGCGUGCG---CGGCCGccgGGCu -3'
miRNA:   3'- gcGUCGCGCGCGCacaGCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 64489 0.66 0.661174
Target:  5'- uGCAGCgggugGCGCGgGUGcUCGGggcCCGcgGGCg -3'
miRNA:   3'- gCGUCG-----CGCGCgCAC-AGCC---GGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 74709 0.66 0.651302
Target:  5'- gCGCgGGCGCGgaaccgggcCGCGgcagCGGCCGcgGACa -3'
miRNA:   3'- -GCG-UCGCGC---------GCGCaca-GCCGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 42648 0.67 0.575345
Target:  5'- cCGCGGC-CGCGCGgaaccagccaagcggCGGCCG-GGCc -3'
miRNA:   3'- -GCGUCGcGCGCGCaca------------GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 122041 0.67 0.572412
Target:  5'- aGCGGCacuGCGCGCG-GaUGGCCGaGAUc -3'
miRNA:   3'- gCGUCG---CGCGCGCaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 73787 0.67 0.572412
Target:  5'- uGCGacGUGCGCGCGgcgGUCGGCgCGcaGAa -3'
miRNA:   3'- gCGU--CGCGCGCGCa--CAGCCG-GCa-CUg -5'
23853 5' -61.7 NC_005261.1 + 2688 0.67 0.572412
Target:  5'- gGCGGCGCGC-CGgcuuUUGGCCGgcgccgGGCc -3'
miRNA:   3'- gCGUCGCGCGcGCac--AGCCGGCa-----CUG- -5'
23853 5' -61.7 NC_005261.1 + 135186 0.67 0.562663
Target:  5'- uGCGGCuCGCGCGgagcaUGGCCGaGGCg -3'
miRNA:   3'- gCGUCGcGCGCGCaca--GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 33602 0.67 0.562663
Target:  5'- gGCGGCGCcgGCGCGgg-CGGCgG-GGCc -3'
miRNA:   3'- gCGUCGCG--CGCGCacaGCCGgCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 118373 0.67 0.562663
Target:  5'- gCGCuGGgGCGCGCGgcccgaggcgcUGgCGGCCGcgGGCg -3'
miRNA:   3'- -GCG-UCgCGCGCGC-----------ACaGCCGGCa-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.