miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 109326 0.66 0.641416
Target:  5'- cCGCgAGCGCGgcCGCGggGUCGGCgGccGCg -3'
miRNA:   3'- -GCG-UCGCGC--GCGCa-CAGCCGgCacUG- -5'
23853 5' -61.7 NC_005261.1 + 104055 0.66 0.641416
Target:  5'- cCGCAGCGCcucggccgcgaGCGCGUccagcUCGGCgGacagGGCg -3'
miRNA:   3'- -GCGUCGCG-----------CGCGCAc----AGCCGgCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 72776 0.66 0.651302
Target:  5'- gGCGGcCGCGCaCGcGUCcggGGCCGcgGACa -3'
miRNA:   3'- gCGUC-GCGCGcGCaCAG---CCGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 71497 0.66 0.631523
Target:  5'- gGCcaGGUGCGCGCGaaaGUCGGCg--GGCu -3'
miRNA:   3'- gCG--UCGCGCGCGCa--CAGCCGgcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 74945 0.66 0.631523
Target:  5'- uGCGGCGCGgGCGcGcUCGGCgCGcucgaGGCc -3'
miRNA:   3'- gCGUCGCGCgCGCaC-AGCCG-GCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 69539 0.66 0.641416
Target:  5'- gCGCuGGCGCGCGCGcUGgggacggCGGCCc---- -3'
miRNA:   3'- -GCG-UCGCGCGCGC-ACa------GCCGGcacug -5'
23853 5' -61.7 NC_005261.1 + 54151 0.66 0.651302
Target:  5'- aCGCGGcCGUGCGCGggGUUG-CCGggaaGACc -3'
miRNA:   3'- -GCGUC-GCGCGCGCa-CAGCcGGCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 73673 0.66 0.631523
Target:  5'- aCGCggagGGCGgGCGCGggcuuagacgGcUCGGCCaUGGCg -3'
miRNA:   3'- -GCG----UCGCgCGCGCa---------C-AGCCGGcACUG- -5'
23853 5' -61.7 NC_005261.1 + 38918 0.66 0.651302
Target:  5'- gCGCGGgccCGCGCGCcaagccggCGGCCG-GGCg -3'
miRNA:   3'- -GCGUC---GCGCGCGcaca----GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 92597 0.66 0.651302
Target:  5'- gCGCAGcCGCucgcgGCGCGUGcCGGggccCCG-GGCg -3'
miRNA:   3'- -GCGUC-GCG-----CGCGCACaGCC----GGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 93423 0.66 0.651302
Target:  5'- cCGCGccccGCGaUGUGCuUGagGGCCGUGGCc -3'
miRNA:   3'- -GCGU----CGC-GCGCGcACagCCGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 70988 0.66 0.641416
Target:  5'- gCGUGGCGCGCG-Gg--CGGCCGccaGGCc -3'
miRNA:   3'- -GCGUCGCGCGCgCacaGCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 88724 0.66 0.631523
Target:  5'- uGCGGgGUGCGCGaUGagGGCCagcuggugGACg -3'
miRNA:   3'- gCGUCgCGCGCGC-ACagCCGGca------CUG- -5'
23853 5' -61.7 NC_005261.1 + 68674 0.66 0.611745
Target:  5'- cCGcCGGCGUccGcCGCGUGggGGCCGgcgcgGACg -3'
miRNA:   3'- -GC-GUCGCG--C-GCGCACagCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 34037 0.66 0.611745
Target:  5'- gCGCGGCGCGCGCGcUGcCcuGCC-UGcACg -3'
miRNA:   3'- -GCGUCGCGCGCGC-ACaGc-CGGcAC-UG- -5'
23853 5' -61.7 NC_005261.1 + 21784 0.66 0.631523
Target:  5'- cCGCGGCGCGgGCcgccgcagccGcCGGCCG-GGCc -3'
miRNA:   3'- -GCGUCGCGCgCGca--------CaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 102670 0.66 0.641416
Target:  5'- cCGCGGCGCccagcgcCGCGUccgccgCGGCCGUcGCu -3'
miRNA:   3'- -GCGUCGCGc------GCGCAca----GCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 47592 0.66 0.608782
Target:  5'- cCGC-GCGCGCGCGagggagccgcccccUGcgggggCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCGCGCGC--------------ACa-----GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 64813 0.66 0.631523
Target:  5'- aCGCGcGCGCGCGCGccgCGcGCCGg--- -3'
miRNA:   3'- -GCGU-CGCGCGCGCacaGC-CGGCacug -5'
23853 5' -61.7 NC_005261.1 + 72240 0.66 0.651302
Target:  5'- gGCGGUGCGCGCaaaGUCGa-CGUGAa -3'
miRNA:   3'- gCGUCGCGCGCGca-CAGCcgGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.