miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 17548 0.7 0.399304
Target:  5'- gGCGGCGCGgGCccgccguUCGGCgGUGGCc -3'
miRNA:   3'- gCGUCGCGCgCGcac----AGCCGgCACUG- -5'
23853 5' -61.7 NC_005261.1 + 20981 0.66 0.63548
Target:  5'- gCGCGGCGCccuacccccuuagacGCGCGccuUGg-GGgCGUGACa -3'
miRNA:   3'- -GCGUCGCG---------------CGCGC---ACagCCgGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 21180 0.69 0.486725
Target:  5'- uGCAGcCGCugGCGCGagcgCGGCCGcgGACg -3'
miRNA:   3'- gCGUC-GCG--CGCGCaca-GCCGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 21784 0.66 0.631523
Target:  5'- cCGCGGCGCGgGCcgccgcagccGcCGGCCG-GGCc -3'
miRNA:   3'- -GCGUCGCGCgCGca--------CaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 21823 0.74 0.234537
Target:  5'- cCGCGGCggGCGCGCGUG-CGGgCG-GGCu -3'
miRNA:   3'- -GCGUCG--CGCGCGCACaGCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 23347 1.09 0.00078
Target:  5'- gCGCAGCGCGCGCGUGUCGGCCGUGACa -3'
miRNA:   3'- -GCGUCGCGCGCGCACAGCCGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 25279 0.7 0.424487
Target:  5'- cCGCgAGgGgGCGCG-GUCuguGGCCGUGAg -3'
miRNA:   3'- -GCG-UCgCgCGCGCaCAG---CCGGCACUg -5'
23853 5' -61.7 NC_005261.1 + 27357 0.67 0.600888
Target:  5'- aGCGGCGCcggaccgGCGCGa---GGCCGgugGGCa -3'
miRNA:   3'- gCGUCGCG-------CGCGCacagCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 28782 0.77 0.151858
Target:  5'- cCGCGGCGCGgGCGcucgCGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCGCgCGCaca-GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 29314 0.69 0.472103
Target:  5'- gGCAGCGCGCcgccgccgcccggccGCGUGcgcuUCGGCgGcgcgGGCg -3'
miRNA:   3'- gCGUCGCGCG---------------CGCAC----AGCCGgCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 29417 0.68 0.52417
Target:  5'- aCGCGGCGgcCGCGgGgcccgCGGCCGUGu- -3'
miRNA:   3'- -GCGUCGC--GCGCgCaca--GCCGGCACug -5'
23853 5' -61.7 NC_005261.1 + 29579 0.67 0.552958
Target:  5'- uGCAGCG-GCGCGUGcagggCuGCCGgGGCc -3'
miRNA:   3'- gCGUCGCgCGCGCACa----GcCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 29843 0.67 0.562663
Target:  5'- aGCuGCGCGC-CGUGcucgcCGGCCGcgcGGCg -3'
miRNA:   3'- gCGuCGCGCGcGCACa----GCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 29903 0.7 0.382255
Target:  5'- cCGCGGCaGCGCGCGag-CGGCUGcgcgagcUGGCg -3'
miRNA:   3'- -GCGUCG-CGCGCGCacaGCCGGC-------ACUG- -5'
23853 5' -61.7 NC_005261.1 + 29972 0.66 0.651302
Target:  5'- gGCGGCGCgGUGCGccGcCGGCgCGUccGGCa -3'
miRNA:   3'- gCGUCGCG-CGCGCa-CaGCCG-GCA--CUG- -5'
23853 5' -61.7 NC_005261.1 + 30035 0.7 0.407592
Target:  5'- uGCAGCGgGcCGCGgccUGcCGGCCGcGGCc -3'
miRNA:   3'- gCGUCGCgC-GCGC---ACaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 30180 0.66 0.610757
Target:  5'- gCGCuGCGCGCcgaggcggccgccGCGcUGgaggCGGCCGcgcUGGCg -3'
miRNA:   3'- -GCGuCGCGCG-------------CGC-ACa---GCCGGC---ACUG- -5'
23853 5' -61.7 NC_005261.1 + 30983 0.77 0.148143
Target:  5'- cCGCGGCGCaaGCGCaaGUCGGCCGgGGCc -3'
miRNA:   3'- -GCGUCGCG--CGCGcaCAGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 31335 0.7 0.391125
Target:  5'- cCGcCAGCGCGCcgcuGCGg--CGGCgCGUGGCc -3'
miRNA:   3'- -GC-GUCGCGCG----CGCacaGCCG-GCACUG- -5'
23853 5' -61.7 NC_005261.1 + 31683 0.68 0.495973
Target:  5'- cCGCGGCGCG-GCGg--CGGCugauCGUGAUc -3'
miRNA:   3'- -GCGUCGCGCgCGCacaGCCG----GCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.