miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 48042 0.73 0.257425
Target:  5'- aGCAcGCGCGCGCG-GUCGGggcCCGcGGCc -3'
miRNA:   3'- gCGU-CGCGCGCGCaCAGCC---GGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 54237 0.73 0.269539
Target:  5'- aCGCGGCGCGCGCucauGUGcagCGcGCCcUGGCg -3'
miRNA:   3'- -GCGUCGCGCGCG----CACa--GC-CGGcACUG- -5'
23853 5' -61.7 NC_005261.1 + 60251 0.73 0.275767
Target:  5'- cCGCGGCGgGaGCGg--CGGCCGUGAa -3'
miRNA:   3'- -GCGUCGCgCgCGCacaGCCGGCACUg -5'
23853 5' -61.7 NC_005261.1 + 49227 0.73 0.282109
Target:  5'- gCGCccAGCGCGCGCaG-GUCGGCCGccgccgcGGCg -3'
miRNA:   3'- -GCG--UCGCGCGCG-CaCAGCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 100733 0.73 0.282109
Target:  5'- cCGCGcGCGCGCGCGg--CGGCgCGcGGCa -3'
miRNA:   3'- -GCGU-CGCGCGCGCacaGCCG-GCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 93942 0.72 0.295138
Target:  5'- cCGCGG-GCGCcgccuccggGCG-GUCGGCCGUcGACg -3'
miRNA:   3'- -GCGUCgCGCG---------CGCaCAGCCGGCA-CUG- -5'
23853 5' -61.7 NC_005261.1 + 128107 0.72 0.295138
Target:  5'- aGCGGCGCgGCGCGggGUCGgGCCGa--- -3'
miRNA:   3'- gCGUCGCG-CGCGCa-CAGC-CGGCacug -5'
23853 5' -61.7 NC_005261.1 + 124262 0.72 0.295138
Target:  5'- gCGCGGCGCcgcccGCGCGcccCGGCCGcGACa -3'
miRNA:   3'- -GCGUCGCG-----CGCGCacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 113900 0.72 0.295138
Target:  5'- aCGCGGCGgGCGCGa--UGGCCGaGGCa -3'
miRNA:   3'- -GCGUCGCgCGCGCacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 38605 0.72 0.295138
Target:  5'- cCGCGGCuG-GCGgGUGUUGGCCGcGGCc -3'
miRNA:   3'- -GCGUCG-CgCGCgCACAGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 105217 0.72 0.301826
Target:  5'- cCGCcGCGCGggcCGCGgccgCGGCCGUGAUc -3'
miRNA:   3'- -GCGuCGCGC---GCGCaca-GCCGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 42495 0.72 0.301826
Target:  5'- gCGCGGCGaCGCGCGUcgCGcCCGUGAUc -3'
miRNA:   3'- -GCGUCGC-GCGCGCAcaGCcGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 17168 0.72 0.308631
Target:  5'- cCGCGGCGCGgGCGUGggcagccCuGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCGCgCGCACa------GcCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 89105 0.72 0.308631
Target:  5'- gCGCuGGCGCGCGCGUGgcacugcgCGcGCCG-GAg -3'
miRNA:   3'- -GCG-UCGCGCGCGCACa-------GC-CGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 87469 0.72 0.321881
Target:  5'- uCGCAG-GCGCGCGUcagguucGgcgCGGCCGUGcugGCg -3'
miRNA:   3'- -GCGUCgCGCGCGCA-------Ca--GCCGGCAC---UG- -5'
23853 5' -61.7 NC_005261.1 + 12960 0.72 0.32259
Target:  5'- gCGCGGCGCGCGCaccccagacaGcGagGGCCGcGACg -3'
miRNA:   3'- -GCGUCGCGCGCG----------CaCagCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 96558 0.72 0.32259
Target:  5'- aGCAuGCGUaGCGCGaauaUGUCcGCCGUGACc -3'
miRNA:   3'- gCGU-CGCG-CGCGC----ACAGcCGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 118548 0.72 0.329744
Target:  5'- uGCGGCGCGCGCGaGgacGCCGUGcccGCg -3'
miRNA:   3'- gCGUCGCGCGCGCaCagcCGGCAC---UG- -5'
23853 5' -61.7 NC_005261.1 + 68133 0.72 0.329744
Target:  5'- cCGCGGCGCG-GCGac-CGcGCCGUGGCc -3'
miRNA:   3'- -GCGUCGCGCgCGCacaGC-CGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 93493 0.71 0.336282
Target:  5'- cCGCGGCgaaGCGCGCGaaccgcggcgccgUGUUGGCCGcGAg -3'
miRNA:   3'- -GCGUCG---CGCGCGC-------------ACAGCCGGCaCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.