Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23853 | 5' | -61.7 | NC_005261.1 | + | 54151 | 0.66 | 0.651302 |
Target: 5'- aCGCGGcCGUGCGCGggGUUG-CCGggaaGACc -3' miRNA: 3'- -GCGUC-GCGCGCGCa-CAGCcGGCa---CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 95658 | 0.66 | 0.651302 |
Target: 5'- gCGCGGCGC-CGCGacgGgcgCGGgUGUGAg -3' miRNA: 3'- -GCGUCGCGcGCGCa--Ca--GCCgGCACUg -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 38918 | 0.66 | 0.651302 |
Target: 5'- gCGCGGgccCGCGCGCcaagccggCGGCCG-GGCg -3' miRNA: 3'- -GCGUC---GCGCGCGcaca----GCCGGCaCUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 102670 | 0.66 | 0.641416 |
Target: 5'- cCGCGGCGCccagcgcCGCGUccgccgCGGCCGUcGCu -3' miRNA: 3'- -GCGUCGCGc------GCGCAca----GCCGGCAcUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 109326 | 0.66 | 0.641416 |
Target: 5'- cCGCgAGCGCGgcCGCGggGUCGGCgGccGCg -3' miRNA: 3'- -GCG-UCGCGC--GCGCa-CAGCCGgCacUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 70988 | 0.66 | 0.641416 |
Target: 5'- gCGUGGCGCGCG-Gg--CGGCCGccaGGCc -3' miRNA: 3'- -GCGUCGCGCGCgCacaGCCGGCa--CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 69539 | 0.66 | 0.641416 |
Target: 5'- gCGCuGGCGCGCGCGcUGgggacggCGGCCc---- -3' miRNA: 3'- -GCG-UCGCGCGCGC-ACa------GCCGGcacug -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 44879 | 0.66 | 0.641416 |
Target: 5'- cCGCgAGCGC-CGCGggGaUGGCCGgGGCg -3' miRNA: 3'- -GCG-UCGCGcGCGCa-CaGCCGGCaCUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 104055 | 0.66 | 0.641416 |
Target: 5'- cCGCAGCGCcucggccgcgaGCGCGUccagcUCGGCgGacagGGCg -3' miRNA: 3'- -GCGUCGCG-----------CGCGCAc----AGCCGgCa---CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 71789 | 0.66 | 0.641416 |
Target: 5'- uCGCAGCugaGCGCGgccCGGcCCGUGGg -3' miRNA: 3'- -GCGUCGcg-CGCGCacaGCC-GGCACUg -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 80061 | 0.66 | 0.641416 |
Target: 5'- gGCGGCGgGCGCG-Gg-GGgCGUGGg -3' miRNA: 3'- gCGUCGCgCGCGCaCagCCgGCACUg -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 20981 | 0.66 | 0.63548 |
Target: 5'- gCGCGGCGCccuacccccuuagacGCGCGccuUGg-GGgCGUGACa -3' miRNA: 3'- -GCGUCGCG---------------CGCGC---ACagCCgGCACUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 64813 | 0.66 | 0.631523 |
Target: 5'- aCGCGcGCGCGCGCGccgCGcGCCGg--- -3' miRNA: 3'- -GCGU-CGCGCGCGCacaGC-CGGCacug -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 133341 | 0.66 | 0.631523 |
Target: 5'- gGCAcGCGCGCGCGgcgCuGCCGcgcagGGCu -3' miRNA: 3'- gCGU-CGCGCGCGCacaGcCGGCa----CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 88724 | 0.66 | 0.631523 |
Target: 5'- uGCGGgGUGCGCGaUGagGGCCagcuggugGACg -3' miRNA: 3'- gCGUCgCGCGCGC-ACagCCGGca------CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 71497 | 0.66 | 0.631523 |
Target: 5'- gGCcaGGUGCGCGCGaaaGUCGGCg--GGCu -3' miRNA: 3'- gCG--UCGCGCGCGCa--CAGCCGgcaCUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 55045 | 0.66 | 0.631523 |
Target: 5'- gCGCAGCuGCGCGgGgccgGcgagcUCGGCCGccgaaGGCa -3' miRNA: 3'- -GCGUCG-CGCGCgCa---C-----AGCCGGCa----CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 21784 | 0.66 | 0.631523 |
Target: 5'- cCGCGGCGCGgGCcgccgcagccGcCGGCCG-GGCc -3' miRNA: 3'- -GCGUCGCGCgCGca--------CaGCCGGCaCUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 74945 | 0.66 | 0.631523 |
Target: 5'- uGCGGCGCGgGCGcGcUCGGCgCGcucgaGGCc -3' miRNA: 3'- gCGUCGCGCgCGCaC-AGCCG-GCa----CUG- -5' |
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23853 | 5' | -61.7 | NC_005261.1 | + | 73673 | 0.66 | 0.631523 |
Target: 5'- aCGCggagGGCGgGCGCGggcuuagacgGcUCGGCCaUGGCg -3' miRNA: 3'- -GCG----UCGCgCGCGCa---------C-AGCCGGcACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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