miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 73673 0.66 0.631523
Target:  5'- aCGCggagGGCGgGCGCGggcuuagacgGcUCGGCCaUGGCg -3'
miRNA:   3'- -GCG----UCGCgCGCGCa---------C-AGCCGGcACUG- -5'
23853 5' -61.7 NC_005261.1 + 133341 0.66 0.631523
Target:  5'- gGCAcGCGCGCGCGgcgCuGCCGcgcagGGCu -3'
miRNA:   3'- gCGU-CGCGCGCGCacaGcCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 73383 0.66 0.628554
Target:  5'- gCGCGGCcacGCGCGCGUG-CagcaccagguacggGGCCGcGAa -3'
miRNA:   3'- -GCGUCG---CGCGCGCACaG--------------CCGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 104117 0.66 0.62163
Target:  5'- cCGCAGC-CGCGCG-GUUcGCCGcGAg -3'
miRNA:   3'- -GCGUCGcGCGCGCaCAGcCGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 76023 0.66 0.62163
Target:  5'- gCGCAGCGCcgcgggcgccccGCGCGccaucagcgUGGCCGgcgGGCg -3'
miRNA:   3'- -GCGUCGCG------------CGCGCaca------GCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 62204 0.66 0.62163
Target:  5'- uGCAGCGCGaGgGUGcgcgCGGCCGcGuCu -3'
miRNA:   3'- gCGUCGCGCgCgCACa---GCCGGCaCuG- -5'
23853 5' -61.7 NC_005261.1 + 70170 0.66 0.611745
Target:  5'- aGCAGCaGgGCGCGggagCGGCCGcuguggaGGCg -3'
miRNA:   3'- gCGUCG-CgCGCGCaca-GCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 68674 0.66 0.611745
Target:  5'- cCGcCGGCGUccGcCGCGUGggGGCCGgcgcgGACg -3'
miRNA:   3'- -GC-GUCGCG--C-GCGCACagCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 34037 0.66 0.611745
Target:  5'- gCGCGGCGCGCGCGcUGcCcuGCC-UGcACg -3'
miRNA:   3'- -GCGUCGCGCGCGC-ACaGc-CGGcAC-UG- -5'
23853 5' -61.7 NC_005261.1 + 126807 0.66 0.611745
Target:  5'- aGCAGCGCGgcgucUGCGUacaggucugcGUUGGUCGgcaGACa -3'
miRNA:   3'- gCGUCGCGC-----GCGCA----------CAGCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 118212 0.66 0.611745
Target:  5'- gCGCuGCGCgGgGCGcUGaCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCG-CgCGC-ACaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 30180 0.66 0.610757
Target:  5'- gCGCuGCGCGCcgaggcggccgccGCGcUGgaggCGGCCGcgcUGGCg -3'
miRNA:   3'- -GCGuCGCGCG-------------CGC-ACa---GCCGGC---ACUG- -5'
23853 5' -61.7 NC_005261.1 + 47592 0.66 0.608782
Target:  5'- cCGC-GCGCGCGCGagggagccgcccccUGcgggggCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCGCGCGC--------------ACa-----GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 101102 0.67 0.601874
Target:  5'- gCGCGGcCGCGCGCGccUUGGCgcccuCGUGGu -3'
miRNA:   3'- -GCGUC-GCGCGCGCacAGCCG-----GCACUg -5'
23853 5' -61.7 NC_005261.1 + 134710 0.67 0.601874
Target:  5'- cCGCGGCGCGCccaGaccCGGCCGgGACc -3'
miRNA:   3'- -GCGUCGCGCGcg-CacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 118270 0.67 0.601874
Target:  5'- uGCAcuGCGCGCacuuCGUGaCGGCCGccgcgGGCa -3'
miRNA:   3'- gCGU--CGCGCGc---GCACaGCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 27357 0.67 0.600888
Target:  5'- aGCGGCGCcggaccgGCGCGa---GGCCGgugGGCa -3'
miRNA:   3'- gCGUCGCG-------CGCGCacagCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 66293 0.67 0.594976
Target:  5'- uCGCAGUGCgucagGCGCGgcacggccaccgaggCGGCCGUG-Ca -3'
miRNA:   3'- -GCGUCGCG-----CGCGCaca------------GCCGGCACuG- -5'
23853 5' -61.7 NC_005261.1 + 45622 0.67 0.592024
Target:  5'- gCGCGGCGCgGCGCGgcgGgccCGcGCCG-GAg -3'
miRNA:   3'- -GCGUCGCG-CGCGCa--Ca--GC-CGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 135011 0.67 0.592024
Target:  5'- gCGCGGCGgGCcCGcacgCGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCgCGcGCaca-GCCGGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.