miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 349 0.7 0.43309
Target:  5'- cCGCAGCcCgGCGCGgcccggCGGCgGUGGCg -3'
miRNA:   3'- -GCGUCGcG-CGCGCaca---GCCGgCACUG- -5'
23853 5' -61.7 NC_005261.1 + 1571 0.67 0.582201
Target:  5'- aGCGGCGCGCcgagcccccaGCG-GUUGGCggcgcgGUGGCu -3'
miRNA:   3'- gCGUCGCGCG----------CGCaCAGCCGg-----CACUG- -5'
23853 5' -61.7 NC_005261.1 + 1737 0.7 0.391125
Target:  5'- cCGCGGUGCGCGgGcccaGGCgCGUGGCc -3'
miRNA:   3'- -GCGUCGCGCGCgCacagCCG-GCACUG- -5'
23853 5' -61.7 NC_005261.1 + 1805 0.65 0.668072
Target:  5'- gGCGGCGCcccgggguagagccGCGCGUaagCGGCCucGGCg -3'
miRNA:   3'- gCGUCGCG--------------CGCGCAca-GCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 2557 0.68 0.504363
Target:  5'- gCGCugGGCGCGgGCGUGUgguacuccccgggCGGCaCGcGGCg -3'
miRNA:   3'- -GCG--UCGCGCgCGCACA-------------GCCG-GCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 2688 0.67 0.572412
Target:  5'- gGCGGCGCGC-CGgcuuUUGGCCGgcgccgGGCc -3'
miRNA:   3'- gCGUCGCGCGcGCac--AGCCGGCa-----CUG- -5'
23853 5' -61.7 NC_005261.1 + 3901 0.67 0.552958
Target:  5'- gCGCGGCGCGgGCGcc-CGcGCCGccGGCg -3'
miRNA:   3'- -GCGUCGCGCgCGCacaGC-CGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 4040 0.71 0.344401
Target:  5'- gGCAGCGCccacaGCGCGUucugcgCGGCCaUGGCg -3'
miRNA:   3'- gCGUCGCG-----CGCGCAca----GCCGGcACUG- -5'
23853 5' -61.7 NC_005261.1 + 7201 0.71 0.351903
Target:  5'- gGguGCGCGUGCGUGgCaGCgGUGAg -3'
miRNA:   3'- gCguCGCGCGCGCACaGcCGgCACUg -5'
23853 5' -61.7 NC_005261.1 + 10529 0.68 0.521322
Target:  5'- cCGCGGCGCGCuCGcUGUCGcccccggcgcgccuGCCG-GGCc -3'
miRNA:   3'- -GCGUCGCGCGcGC-ACAGC--------------CGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 10912 0.69 0.47756
Target:  5'- gGCAGCGC-CGCc-GcCGGCCGcGACa -3'
miRNA:   3'- gCGUCGCGcGCGcaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 11484 0.66 0.661174
Target:  5'- gGCGGgGCGgGgGUGcCGGCuCGaGGCu -3'
miRNA:   3'- gCGUCgCGCgCgCACaGCCG-GCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 12325 0.66 0.631523
Target:  5'- gGCgGGCGCGCGCuUGgccggcgCGGCCGccgccgcGGCg -3'
miRNA:   3'- gCG-UCGCGCGCGcACa------GCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 12960 0.72 0.32259
Target:  5'- gCGCGGCGCGCGCaccccagacaGcGagGGCCGcGACg -3'
miRNA:   3'- -GCGUCGCGCGCG----------CaCagCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 13123 0.7 0.391125
Target:  5'- gGCGGcCGCgggGCGCGUGU-GGUCgGUGACg -3'
miRNA:   3'- gCGUC-GCG---CGCGCACAgCCGG-CACUG- -5'
23853 5' -61.7 NC_005261.1 + 13323 0.71 0.344401
Target:  5'- aCGCAGCGCccucgcacucGCGCGgccagcgGUCGGCgGaGGCu -3'
miRNA:   3'- -GCGUCGCG----------CGCGCa------CAGCCGgCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 13680 0.7 0.391125
Target:  5'- gCGCGGgGCGCGCGggcGUgGGgCGgGGCg -3'
miRNA:   3'- -GCGUCgCGCGCGCa--CAgCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 15502 0.66 0.661174
Target:  5'- uGCgGGCgGgGCGUGUGUCGG-CGUG-Ca -3'
miRNA:   3'- gCG-UCG-CgCGCGCACAGCCgGCACuG- -5'
23853 5' -61.7 NC_005261.1 + 15692 0.79 0.104192
Target:  5'- cCGCAGCGCGaGCGUugcGUCGGCUGggugGACg -3'
miRNA:   3'- -GCGUCGCGCgCGCA---CAGCCGGCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 17168 0.72 0.308631
Target:  5'- cCGCGGCGCGgGCGUGggcagccCuGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCGCgCGCACa------GcCGGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.