miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 1805 0.65 0.668072
Target:  5'- gGCGGCGCcccgggguagagccGCGCGUaagCGGCCucGGCg -3'
miRNA:   3'- gCGUCGCG--------------CGCGCAca-GCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 118933 0.75 0.213383
Target:  5'- gCGCGGCGcCGCGCG-GcUGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGC-GCGCGCaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 66536 0.75 0.218513
Target:  5'- aGCAGCaCGCGCagcagcugGUCGGCCGUGcCg -3'
miRNA:   3'- gCGUCGcGCGCGca------CAGCCGGCACuG- -5'
23853 5' -61.7 NC_005261.1 + 31824 0.74 0.234537
Target:  5'- aGCGGCGCGCGC-UGgcgCGcGCCGUG-Cu -3'
miRNA:   3'- gCGUCGCGCGCGcACa--GC-CGGCACuG- -5'
23853 5' -61.7 NC_005261.1 + 21823 0.74 0.234537
Target:  5'- cCGCGGCggGCGCGCGUG-CGGgCG-GGCu -3'
miRNA:   3'- -GCGUCG--CGCGCGCACaGCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 104177 0.74 0.245761
Target:  5'- gCGCcGCGCGCGgGUcGUCGGgCGgGACg -3'
miRNA:   3'- -GCGuCGCGCGCgCA-CAGCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 118583 0.74 0.248058
Target:  5'- gGCGGCGCGCGCcgccGccgcggagcucgcgcUGUCGGCCGUuGCc -3'
miRNA:   3'- gCGUCGCGCGCG----C---------------ACAGCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 48042 0.73 0.257425
Target:  5'- aGCAcGCGCGCGCG-GUCGGggcCCGcGGCc -3'
miRNA:   3'- gCGU-CGCGCGCGCaCAGCC---GGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 35464 0.73 0.257425
Target:  5'- gCGCGGCGCGCGCGcgucccgggGUCccuGCCGcGGCa -3'
miRNA:   3'- -GCGUCGCGCGCGCa--------CAGc--CGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 67299 0.75 0.203434
Target:  5'- cCGCcGCGCGCGCGccgccGUCGGCCGccGCc -3'
miRNA:   3'- -GCGuCGCGCGCGCa----CAGCCGGCacUG- -5'
23853 5' -61.7 NC_005261.1 + 104323 0.75 0.203434
Target:  5'- gCGCGGaCGCGCGCGUccagcgGcCGGCCGUcGCg -3'
miRNA:   3'- -GCGUC-GCGCGCGCA------CaGCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 67114 0.75 0.198611
Target:  5'- gGCGGCGCGCGCaGUGcggCGGCCc-GACc -3'
miRNA:   3'- gCGUCGCGCGCG-CACa--GCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 15692 0.79 0.104192
Target:  5'- cCGCAGCGCGaGCGUugcGUCGGCUGggugGACg -3'
miRNA:   3'- -GCGUCGCGCgCGCA---CAGCCGGCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 53871 0.79 0.118267
Target:  5'- gCGCGGCGCGCGCGcUGUCGaGUCGaagcgGGCc -3'
miRNA:   3'- -GCGUCGCGCGCGC-ACAGC-CGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 57796 0.78 0.124379
Target:  5'- gCGCGGCGgGCGCGcGaaGGCCGUGAa -3'
miRNA:   3'- -GCGUCGCgCGCGCaCagCCGGCACUg -5'
23853 5' -61.7 NC_005261.1 + 30983 0.77 0.148143
Target:  5'- cCGCGGCGCaaGCGCaaGUCGGCCGgGGCc -3'
miRNA:   3'- -GCGUCGCG--CGCGcaCAGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 28782 0.77 0.151858
Target:  5'- cCGCGGCGCGgGCGcucgCGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCGCgCGCaca-GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 133828 0.76 0.171729
Target:  5'- gCGCuGCGCGgcCGCGUG-CGcGCCGUGGCc -3'
miRNA:   3'- -GCGuCGCGC--GCGCACaGC-CGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 103436 0.76 0.184739
Target:  5'- aCGC-GCGCGCGCGccucgcgGUCGGCCGccGCg -3'
miRNA:   3'- -GCGuCGCGCGCGCa------CAGCCGGCacUG- -5'
23853 5' -61.7 NC_005261.1 + 83383 0.76 0.189265
Target:  5'- gCGCGGCGaGCGCGgccUCGGCCGaGGCg -3'
miRNA:   3'- -GCGUCGCgCGCGCac-AGCCGGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.