miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 1805 0.65 0.668072
Target:  5'- gGCGGCGCcccgggguagagccGCGCGUaagCGGCCucGGCg -3'
miRNA:   3'- gCGUCGCG--------------CGCGCAca-GCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 73383 0.66 0.628554
Target:  5'- gCGCGGCcacGCGCGCGUG-CagcaccagguacggGGCCGcGAa -3'
miRNA:   3'- -GCGUCG---CGCGCGCACaG--------------CCGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 47592 0.66 0.608782
Target:  5'- cCGC-GCGCGCGCGagggagccgcccccUGcgggggCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCGCGCGC--------------ACa-----GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 126807 0.66 0.611745
Target:  5'- aGCAGCGCGgcgucUGCGUacaggucugcGUUGGUCGgcaGACa -3'
miRNA:   3'- gCGUCGCGC-----GCGCA----------CAGCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 30180 0.66 0.610757
Target:  5'- gCGCuGCGCGCcgaggcggccgccGCGcUGgaggCGGCCGcgcUGGCg -3'
miRNA:   3'- -GCGuCGCGCG-------------CGC-ACa---GCCGGC---ACUG- -5'
23853 5' -61.7 NC_005261.1 + 133341 0.66 0.631523
Target:  5'- gGCAcGCGCGCGCGgcgCuGCCGcgcagGGCu -3'
miRNA:   3'- gCGU-CGCGCGCGCacaGcCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 71497 0.66 0.631523
Target:  5'- gGCcaGGUGCGCGCGaaaGUCGGCg--GGCu -3'
miRNA:   3'- gCG--UCGCGCGCGCa--CAGCCGgcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 62204 0.66 0.62163
Target:  5'- uGCAGCGCGaGgGUGcgcgCGGCCGcGuCu -3'
miRNA:   3'- gCGUCGCGCgCgCACa---GCCGGCaCuG- -5'
23853 5' -61.7 NC_005261.1 + 88724 0.66 0.631523
Target:  5'- uGCGGgGUGCGCGaUGagGGCCagcuggugGACg -3'
miRNA:   3'- gCGUCgCGCGCGC-ACagCCGGca------CUG- -5'
23853 5' -61.7 NC_005261.1 + 104117 0.66 0.62163
Target:  5'- cCGCAGC-CGCGCG-GUUcGCCGcGAg -3'
miRNA:   3'- -GCGUCGcGCGCGCaCAGcCGGCaCUg -5'
23853 5' -61.7 NC_005261.1 + 55045 0.66 0.631523
Target:  5'- gCGCAGCuGCGCGgGgccgGcgagcUCGGCCGccgaaGGCa -3'
miRNA:   3'- -GCGUCG-CGCGCgCa---C-----AGCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 118212 0.66 0.611745
Target:  5'- gCGCuGCGCgGgGCGcUGaCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCG-CgCGC-ACaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 70170 0.66 0.611745
Target:  5'- aGCAGCaGgGCGCGggagCGGCCGcuguggaGGCg -3'
miRNA:   3'- gCGUCG-CgCGCGCaca-GCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 12325 0.66 0.631523
Target:  5'- gGCgGGCGCGCGCuUGgccggcgCGGCCGccgccgcGGCg -3'
miRNA:   3'- gCG-UCGCGCGCGcACa------GCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 34037 0.66 0.611745
Target:  5'- gCGCGGCGCGCGCGcUGcCcuGCC-UGcACg -3'
miRNA:   3'- -GCGUCGCGCGCGC-ACaGc-CGGcAC-UG- -5'
23853 5' -61.7 NC_005261.1 + 21784 0.66 0.631523
Target:  5'- cCGCGGCGCGgGCcgccgcagccGcCGGCCG-GGCc -3'
miRNA:   3'- -GCGUCGCGCgCGca--------CaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 64813 0.66 0.631523
Target:  5'- aCGCGcGCGCGCGCGccgCGcGCCGg--- -3'
miRNA:   3'- -GCGU-CGCGCGCGCacaGC-CGGCacug -5'
23853 5' -61.7 NC_005261.1 + 76023 0.66 0.62163
Target:  5'- gCGCAGCGCcgcgggcgccccGCGCGccaucagcgUGGCCGgcgGGCg -3'
miRNA:   3'- -GCGUCGCG------------CGCGCaca------GCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 74945 0.66 0.631523
Target:  5'- uGCGGCGCGgGCGcGcUCGGCgCGcucgaGGCc -3'
miRNA:   3'- gCGUCGCGCgCGCaC-AGCCG-GCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 68674 0.66 0.611745
Target:  5'- cCGcCGGCGUccGcCGCGUGggGGCCGgcgcgGACg -3'
miRNA:   3'- -GC-GUCGCG--C-GCGCACagCCGGCa----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.