miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 138020 0.7 0.43309
Target:  5'- cCGCAGCcCgGCGCGgcccggCGGCgGUGGCg -3'
miRNA:   3'- -GCGUCGcG-CGCGCaca---GCCGgCACUG- -5'
23853 5' -61.7 NC_005261.1 + 136614 0.69 0.450595
Target:  5'- aGCGGCGCGCGCGcgccgagggCGGCgGgaaGGCc -3'
miRNA:   3'- gCGUCGCGCGCGCaca------GCCGgCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 135776 0.71 0.367252
Target:  5'- gCGCAGaGCGCGUGccgcUGUCGGagGUGACc -3'
miRNA:   3'- -GCGUCgCGCGCGC----ACAGCCggCACUG- -5'
23853 5' -61.7 NC_005261.1 + 135186 0.67 0.562663
Target:  5'- uGCGGCuCGCGCGgagcaUGGCCGaGGCg -3'
miRNA:   3'- gCGUCGcGCGCGCaca--GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 135011 0.67 0.592024
Target:  5'- gCGCGGCGgGCcCGcacgCGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGCgCGcGCaca-GCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 134710 0.67 0.601874
Target:  5'- cCGCGGCGCGCccaGaccCGGCCGgGACc -3'
miRNA:   3'- -GCGUCGCGCGcg-CacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 134200 0.69 0.47756
Target:  5'- gCGCGGCucgGCGCGCGggucgcggCGGCCGgcagcgucggcgUGGCg -3'
miRNA:   3'- -GCGUCG---CGCGCGCaca-----GCCGGC------------ACUG- -5'
23853 5' -61.7 NC_005261.1 + 133828 0.76 0.171729
Target:  5'- gCGCuGCGCGgcCGCGUG-CGcGCCGUGGCc -3'
miRNA:   3'- -GCGuCGCGC--GCGCACaGC-CGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 133341 0.66 0.631523
Target:  5'- gGCAcGCGCGCGCGgcgCuGCCGcgcagGGCu -3'
miRNA:   3'- gCGU-CGCGCGCGCacaGcCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 133145 0.67 0.582201
Target:  5'- uGCGGUGCGCGC---UCGccGCCGUcGGCg -3'
miRNA:   3'- gCGUCGCGCGCGcacAGC--CGGCA-CUG- -5'
23853 5' -61.7 NC_005261.1 + 131769 0.68 0.543305
Target:  5'- gCGCGGCGgGCGCGccgcUgGGCCccGACg -3'
miRNA:   3'- -GCGUCGCgCGCGCac--AgCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 130841 0.71 0.367252
Target:  5'- gCGCucaaccuuGCGCGCGCGcc-CGGCCG-GGCg -3'
miRNA:   3'- -GCGu-------CGCGCGCGCacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 130636 0.7 0.391125
Target:  5'- gCGCGGgGCGCGCGUG-CGcucGCCGacGCg -3'
miRNA:   3'- -GCGUCgCGCGCGCACaGC---CGGCacUG- -5'
23853 5' -61.7 NC_005261.1 + 128107 0.72 0.295138
Target:  5'- aGCGGCGCgGCGCGggGUCGgGCCGa--- -3'
miRNA:   3'- gCGUCGCG-CGCGCa-CAGC-CGGCacug -5'
23853 5' -61.7 NC_005261.1 + 126807 0.66 0.611745
Target:  5'- aGCAGCGCGgcgucUGCGUacaggucugcGUUGGUCGgcaGACa -3'
miRNA:   3'- gCGUCGCGC-----GCGCA----------CAGCCGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 124262 0.72 0.295138
Target:  5'- gCGCGGCGCcgcccGCGCGcccCGGCCGcGACa -3'
miRNA:   3'- -GCGUCGCG-----CGCGCacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 123173 0.69 0.47756
Target:  5'- gGC-GCGCGgGCGUGgUGGCUGgugugGGCg -3'
miRNA:   3'- gCGuCGCGCgCGCACaGCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 122363 0.66 0.651302
Target:  5'- cCGCGGCuCGCGCGgccccaccgCGGCCugggGGCg -3'
miRNA:   3'- -GCGUCGcGCGCGCaca------GCCGGca--CUG- -5'
23853 5' -61.7 NC_005261.1 + 122041 0.67 0.572412
Target:  5'- aGCGGCacuGCGCGCG-GaUGGCCGaGAUc -3'
miRNA:   3'- gCGUCG---CGCGCGCaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 121067 0.7 0.399304
Target:  5'- gCGCGGUGUGCGCGgcgccggCGGCCGccaGCg -3'
miRNA:   3'- -GCGUCGCGCGCGCaca----GCCGGCac-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.