miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 3' -58.9 NC_005261.1 + 7338 0.66 0.760072
Target:  5'- aAGGGGGAggAG-GAGAGaGGGagaGgGGAGg -3'
miRNA:   3'- -UCCCUCUa-UCaCUCUC-CCCg--CgCCUU- -5'
23856 3' -58.9 NC_005261.1 + 11464 0.66 0.760072
Target:  5'- aAGcGGAGcgGGcgcgGAGGGGcGGgGCGGGGg -3'
miRNA:   3'- -UC-CCUCuaUCa---CUCUCC-CCgCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 98354 0.66 0.760072
Target:  5'- cGGGGGc----GGGGGuGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuaucaCUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 98382 0.66 0.760072
Target:  5'- cGGGcGcaAUAccggcGUGGGGGcGGGCGCGGAc -3'
miRNA:   3'- uCCCuC--UAU-----CACUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 30474 0.66 0.750488
Target:  5'- gGGGGGGAcgAG-GAGGccGGGGCcuCGGAAa -3'
miRNA:   3'- -UCCCUCUa-UCaCUCU--CCCCGc-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 22084 0.66 0.7408
Target:  5'- gAGGGGGcgccgcGUGGgggcGGGAGGGcgguGUGCGGAGa -3'
miRNA:   3'- -UCCCUC------UAUCa---CUCUCCC----CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 24672 0.66 0.7408
Target:  5'- cAGGG-GAUGccGGGAcGGGGgGCGGGu -3'
miRNA:   3'- -UCCCuCUAUcaCUCU-CCCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 73180 0.66 0.733961
Target:  5'- cGGGGGGAgGGUGcacacgacgagguugGccccgggcgccucGAGGGGCGCGGu- -3'
miRNA:   3'- -UCCCUCUaUCAC---------------U-------------CUCCCCGCGCCuu -5'
23856 3' -58.9 NC_005261.1 + 9637 0.66 0.731016
Target:  5'- uGGGGGcugGGUGGGcGGGGCccacucggGCGGGc -3'
miRNA:   3'- uCCCUCua-UCACUCuCCCCG--------CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 46027 0.66 0.731016
Target:  5'- cGGGAGc-AG-GAcGGGGGCGCGGu- -3'
miRNA:   3'- uCCCUCuaUCaCUcUCCCCGCGCCuu -5'
23856 3' -58.9 NC_005261.1 + 74923 0.66 0.731016
Target:  5'- gGGGGAGGgcgAG-GAcGGGGacugcGGCGCGGGc -3'
miRNA:   3'- -UCCCUCUa--UCaCU-CUCC-----CCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 137723 0.66 0.725105
Target:  5'- cGGGGGGUGuuuuuUGGGGGGGggccgaaaucggcgcGCGCGGGGg -3'
miRNA:   3'- uCCCUCUAUc----ACUCUCCC---------------CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 111083 0.66 0.721148
Target:  5'- gAGGGcc-UGGUGuGGGGGGC-CGGGGa -3'
miRNA:   3'- -UCCCucuAUCACuCUCCCCGcGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 27343 0.66 0.721148
Target:  5'- cGGGGGAaAGgGGGAGcGGCGcCGGAc -3'
miRNA:   3'- uCCCUCUaUCaCUCUCcCCGC-GCCUu -5'
23856 3' -58.9 NC_005261.1 + 97627 0.66 0.721148
Target:  5'- gGGcGGAGcgGGcG-GAGcGGGCGCGGGu -3'
miRNA:   3'- -UC-CCUCuaUCaCuCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 50596 0.66 0.711203
Target:  5'- cGGGGAGGgcaGG-GAGAcGGGGCGCc--- -3'
miRNA:   3'- -UCCCUCUa--UCaCUCU-CCCCGCGccuu -5'
23856 3' -58.9 NC_005261.1 + 28644 0.67 0.70119
Target:  5'- cGGGGGAgAGUGAcGAGGccGGCGgGGc- -3'
miRNA:   3'- uCCCUCUaUCACU-CUCC--CCGCgCCuu -5'
23856 3' -58.9 NC_005261.1 + 7188 0.67 0.69112
Target:  5'- aGGGGGGAg---GGGGGGGuGCGCGu-- -3'
miRNA:   3'- -UCCCUCUaucaCUCUCCC-CGCGCcuu -5'
23856 3' -58.9 NC_005261.1 + 128889 0.67 0.69112
Target:  5'- cGGGGGccgGGUGGGAGgcGGGCGUcGAAg -3'
miRNA:   3'- uCCCUCua-UCACUCUC--CCCGCGcCUU- -5'
23856 3' -58.9 NC_005261.1 + 56121 0.67 0.685054
Target:  5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.