miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 3' -58.9 NC_005261.1 + 39 0.68 0.634066
Target:  5'- cGGGGGGGUGuuuuuUGGGGGGGggccgaaaucggcgcGCGCGGGGg -3'
miRNA:   3'- -UCCCUCUAUc----ACUCUCCC---------------CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 503 0.77 0.193627
Target:  5'- gGGGGAGGgagAGgGGGGGaGGGCGCGGGc -3'
miRNA:   3'- -UCCCUCUa--UCaCUCUC-CCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 1004 0.68 0.609514
Target:  5'- cGGGGGcgGG-GGGcGGGGgGCGGGu -3'
miRNA:   3'- uCCCUCuaUCaCUCuCCCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 5320 0.72 0.382617
Target:  5'- aGGaGGGGGUAG-GGGAGaGGCGCGGGu -3'
miRNA:   3'- -UC-CCUCUAUCaCUCUCcCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 5379 0.71 0.452558
Target:  5'- gGGGGAGggAGggaGGGAGGGagagcgagaGCGCGGGc -3'
miRNA:   3'- -UCCCUCuaUCa--CUCUCCC---------CGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 7188 0.67 0.69112
Target:  5'- aGGGGGGAg---GGGGGGGuGCGCGu-- -3'
miRNA:   3'- -UCCCUCUaucaCUCUCCC-CGCGCcuu -5'
23856 3' -58.9 NC_005261.1 + 7338 0.66 0.760072
Target:  5'- aAGGGGGAggAG-GAGAGaGGGagaGgGGAGg -3'
miRNA:   3'- -UCCCUCUa-UCaCUCUC-CCCg--CgCCUU- -5'
23856 3' -58.9 NC_005261.1 + 7994 0.71 0.434411
Target:  5'- uGGGAGAggggGGaGAGGGGGGCuugagcgaGCGGGu -3'
miRNA:   3'- uCCCUCUa---UCaCUCUCCCCG--------CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 9637 0.66 0.731016
Target:  5'- uGGGGGcugGGUGGGcGGGGCccacucggGCGGGc -3'
miRNA:   3'- uCCCUCua-UCACUCuCCCCG--------CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 11306 0.73 0.326869
Target:  5'- aGGGGAGGUGGgGAGgauggagauagguGGGGGUGgGGAGg -3'
miRNA:   3'- -UCCCUCUAUCaCUC-------------UCCCCGCgCCUU- -5'
23856 3' -58.9 NC_005261.1 + 11385 0.82 0.091569
Target:  5'- gAGGGAGggAGUGuGGGcGGGCGCGGGGa -3'
miRNA:   3'- -UCCCUCuaUCACuCUC-CCCGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 11423 0.73 0.358307
Target:  5'- aGGaGGAGGcgGGcGGGGGGGGCgGCGGAAg -3'
miRNA:   3'- -UC-CCUCUa-UCaCUCUCCCCG-CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 11464 0.66 0.760072
Target:  5'- aAGcGGAGcgGGcgcgGAGGGGcGGgGCGGGGg -3'
miRNA:   3'- -UC-CCUCuaUCa---CUCUCC-CCgCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 11815 0.71 0.425497
Target:  5'- gAGGGGGAaAGaGAGuGGGGGCGgGGGc -3'
miRNA:   3'- -UCCCUCUaUCaCUC-UCCCCGCgCCUu -5'
23856 3' -58.9 NC_005261.1 + 13713 0.68 0.609514
Target:  5'- uGGGGGcGggGGUGGGGGuGGGgGUGGGc -3'
miRNA:   3'- -UCCCU-CuaUCACUCUC-CCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 15038 0.68 0.629971
Target:  5'- cGGGGGcGUAGcGGGGGGGGUcggggucgcgGCGGGGu -3'
miRNA:   3'- uCCCUC-UAUCaCUCUCCCCG----------CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 22084 0.66 0.7408
Target:  5'- gAGGGGGcgccgcGUGGgggcGGGAGGGcgguGUGCGGAGa -3'
miRNA:   3'- -UCCCUC------UAUCa---CUCUCCC----CGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 22567 0.68 0.629971
Target:  5'- cGGGGAGGg---GAGGGGGagaGCGgCGGAGg -3'
miRNA:   3'- -UCCCUCUaucaCUCUCCC---CGC-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 22982 0.68 0.619738
Target:  5'- cGGGAGGaggcggcggAGgaaGAGGGGGGCcCGGAGg -3'
miRNA:   3'- uCCCUCUa--------UCa--CUCUCCCCGcGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 24134 0.68 0.598287
Target:  5'- uGGGGGcugGGUGGGcGGGGCucaccugGCGGGAu -3'
miRNA:   3'- uCCCUCua-UCACUCuCCCCG-------CGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.