miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 3' -58.9 NC_005261.1 + 24672 0.66 0.7408
Target:  5'- cAGGG-GAUGccGGGAcGGGGgGCGGGu -3'
miRNA:   3'- -UCCCuCUAUcaCUCU-CCCCgCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 26324 1.06 0.001951
Target:  5'- aAGGGAGAUAGUGAGAGGGGCGCGGAAa -3'
miRNA:   3'- -UCCCUCUAUCACUCUCCCCGCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 26815 0.71 0.461786
Target:  5'- aGGGGGGAaccugccugcucUGG-GAGGGGGGCgGUGGGc -3'
miRNA:   3'- -UCCCUCU------------AUCaCUCUCCCCG-CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 26876 0.76 0.2138
Target:  5'- gGGcGGGGGUGGgugGGGGGGGGCGgGGGc -3'
miRNA:   3'- -UC-CCUCUAUCa--CUCUCCCCGCgCCUu -5'
23856 3' -58.9 NC_005261.1 + 27236 0.7 0.490043
Target:  5'- aAGGGGGAggcgccuggGGUGGGGcGGGGUguGCGGGc -3'
miRNA:   3'- -UCCCUCUa--------UCACUCU-CCCCG--CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 27343 0.66 0.721148
Target:  5'- cGGGGGAaAGgGGGAGcGGCGcCGGAc -3'
miRNA:   3'- uCCCUCUaUCaCUCUCcCCGC-GCCUu -5'
23856 3' -58.9 NC_005261.1 + 28644 0.67 0.70119
Target:  5'- cGGGGGAgAGUGAcGAGGccGGCGgGGc- -3'
miRNA:   3'- uCCCUCUaUCACU-CUCC--CCGCgCCuu -5'
23856 3' -58.9 NC_005261.1 + 30474 0.66 0.750488
Target:  5'- gGGGGGGAcgAG-GAGGccGGGGCcuCGGAAa -3'
miRNA:   3'- -UCCCUCUa-UCaCUCU--CCCCGc-GCCUU- -5'
23856 3' -58.9 NC_005261.1 + 32922 0.72 0.374393
Target:  5'- uGGGGGGcggcGGgcggGGGGGGGGCGgGGAGg -3'
miRNA:   3'- -UCCCUCua--UCa---CUCUCCCCGCgCCUU- -5'
23856 3' -58.9 NC_005261.1 + 32969 0.69 0.52891
Target:  5'- cGGGAGGcGG-GAGAGGaGGgacCGCGGAGg -3'
miRNA:   3'- uCCCUCUaUCaCUCUCC-CC---GCGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 33010 0.7 0.480531
Target:  5'- cGGGGaAGggGG-GAGGGGGGCGCcGAu -3'
miRNA:   3'- -UCCC-UCuaUCaCUCUCCCCGCGcCUu -5'
23856 3' -58.9 NC_005261.1 + 39718 0.69 0.527924
Target:  5'- aGGGGAGggGGUuuGGGGGGCgggugccccagucGCGGAu -3'
miRNA:   3'- -UCCCUCuaUCAcuCUCCCCG-------------CGCCUu -5'
23856 3' -58.9 NC_005261.1 + 43792 0.68 0.599307
Target:  5'- gAGGGcgccGcgGGUGAG-GGGGCGcCGGGc -3'
miRNA:   3'- -UCCCu---CuaUCACUCuCCCCGC-GCCUu -5'
23856 3' -58.9 NC_005261.1 + 46027 0.66 0.731016
Target:  5'- cGGGAGc-AG-GAcGGGGGCGCGGu- -3'
miRNA:   3'- uCCCUCuaUCaCUcUCCCCGCGCCuu -5'
23856 3' -58.9 NC_005261.1 + 50596 0.66 0.711203
Target:  5'- cGGGGAGGgcaGG-GAGAcGGGGCGCc--- -3'
miRNA:   3'- -UCCCUCUa--UCaCUCU-CCCCGCGccuu -5'
23856 3' -58.9 NC_005261.1 + 56121 0.67 0.685054
Target:  5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3'
miRNA:   3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5'
23856 3' -58.9 NC_005261.1 + 57178 0.72 0.407138
Target:  5'- gAGGGAGuggGGUcggcgggaaggggGGGGGGGGCGCGcGGGu -3'
miRNA:   3'- -UCCCUCua-UCA-------------CUCUCCCCGCGC-CUU- -5'
23856 3' -58.9 NC_005261.1 + 69930 0.73 0.327611
Target:  5'- cAGGGGGuggGGUGGGAgccGGGGauaGCGGAGg -3'
miRNA:   3'- -UCCCUCua-UCACUCU---CCCCg--CGCCUU- -5'
23856 3' -58.9 NC_005261.1 + 73180 0.66 0.733961
Target:  5'- cGGGGGGAgGGUGcacacgacgagguugGccccgggcgccucGAGGGGCGCGGu- -3'
miRNA:   3'- -UCCCUCUaUCAC---------------U-------------CUCCCCGCGCCuu -5'
23856 3' -58.9 NC_005261.1 + 74923 0.66 0.731016
Target:  5'- gGGGGAGGgcgAG-GAcGGGGacugcGGCGCGGGc -3'
miRNA:   3'- -UCCCUCUa--UCaCU-CUCC-----CCGCGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.