Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23856 | 3' | -58.9 | NC_005261.1 | + | 24672 | 0.66 | 0.7408 |
Target: 5'- cAGGG-GAUGccGGGAcGGGGgGCGGGu -3' miRNA: 3'- -UCCCuCUAUcaCUCU-CCCCgCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 26324 | 1.06 | 0.001951 |
Target: 5'- aAGGGAGAUAGUGAGAGGGGCGCGGAAa -3' miRNA: 3'- -UCCCUCUAUCACUCUCCCCGCGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 26815 | 0.71 | 0.461786 |
Target: 5'- aGGGGGGAaccugccugcucUGG-GAGGGGGGCgGUGGGc -3' miRNA: 3'- -UCCCUCU------------AUCaCUCUCCCCG-CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 26876 | 0.76 | 0.2138 |
Target: 5'- gGGcGGGGGUGGgugGGGGGGGGCGgGGGc -3' miRNA: 3'- -UC-CCUCUAUCa--CUCUCCCCGCgCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 27236 | 0.7 | 0.490043 |
Target: 5'- aAGGGGGAggcgccuggGGUGGGGcGGGGUguGCGGGc -3' miRNA: 3'- -UCCCUCUa--------UCACUCU-CCCCG--CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 27343 | 0.66 | 0.721148 |
Target: 5'- cGGGGGAaAGgGGGAGcGGCGcCGGAc -3' miRNA: 3'- uCCCUCUaUCaCUCUCcCCGC-GCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 28644 | 0.67 | 0.70119 |
Target: 5'- cGGGGGAgAGUGAcGAGGccGGCGgGGc- -3' miRNA: 3'- uCCCUCUaUCACU-CUCC--CCGCgCCuu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 30474 | 0.66 | 0.750488 |
Target: 5'- gGGGGGGAcgAG-GAGGccGGGGCcuCGGAAa -3' miRNA: 3'- -UCCCUCUa-UCaCUCU--CCCCGc-GCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 32922 | 0.72 | 0.374393 |
Target: 5'- uGGGGGGcggcGGgcggGGGGGGGGCGgGGAGg -3' miRNA: 3'- -UCCCUCua--UCa---CUCUCCCCGCgCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 32969 | 0.69 | 0.52891 |
Target: 5'- cGGGAGGcGG-GAGAGGaGGgacCGCGGAGg -3' miRNA: 3'- uCCCUCUaUCaCUCUCC-CC---GCGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 33010 | 0.7 | 0.480531 |
Target: 5'- cGGGGaAGggGG-GAGGGGGGCGCcGAu -3' miRNA: 3'- -UCCC-UCuaUCaCUCUCCCCGCGcCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 39718 | 0.69 | 0.527924 |
Target: 5'- aGGGGAGggGGUuuGGGGGGCgggugccccagucGCGGAu -3' miRNA: 3'- -UCCCUCuaUCAcuCUCCCCG-------------CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 43792 | 0.68 | 0.599307 |
Target: 5'- gAGGGcgccGcgGGUGAG-GGGGCGcCGGGc -3' miRNA: 3'- -UCCCu---CuaUCACUCuCCCCGC-GCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 46027 | 0.66 | 0.731016 |
Target: 5'- cGGGAGc-AG-GAcGGGGGCGCGGu- -3' miRNA: 3'- uCCCUCuaUCaCUcUCCCCGCGCCuu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 50596 | 0.66 | 0.711203 |
Target: 5'- cGGGGAGGgcaGG-GAGAcGGGGCGCc--- -3' miRNA: 3'- -UCCCUCUa--UCaCUCU-CCCCGCGccuu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 56121 | 0.67 | 0.685054 |
Target: 5'- cGGGAGcgcgccgcagGGcGGGGGGCGCGGGc -3' miRNA: 3'- uCCCUCuauca-----CU-CUCCCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 57178 | 0.72 | 0.407138 |
Target: 5'- gAGGGAGuggGGUcggcgggaaggggGGGGGGGGCGCGcGGGu -3' miRNA: 3'- -UCCCUCua-UCA-------------CUCUCCCCGCGC-CUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 69930 | 0.73 | 0.327611 |
Target: 5'- cAGGGGGuggGGUGGGAgccGGGGauaGCGGAGg -3' miRNA: 3'- -UCCCUCua-UCACUCU---CCCCg--CGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 73180 | 0.66 | 0.733961 |
Target: 5'- cGGGGGGAgGGUGcacacgacgagguugGccccgggcgccucGAGGGGCGCGGu- -3' miRNA: 3'- -UCCCUCUaUCAC---------------U-------------CUCCCCGCGCCuu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 74923 | 0.66 | 0.731016 |
Target: 5'- gGGGGAGGgcgAG-GAcGGGGacugcGGCGCGGGc -3' miRNA: 3'- -UCCCUCUa--UCaCU-CUCC-----CCGCGCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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